Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Steap3-203ENSMUST00000112641 5158 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Glyctk-202ENSMUST00000112543 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Gm9466-201ENSMUST00000218144 2246 ntBASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 AC154314.2-201ENSMUST00000223677 3502 ntBASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Vipr2-201ENSMUST00000011315 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Emc1-201ENSMUST00000042096 4706 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Gtf3c2-201ENSMUST00000088010 4552 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Glb1l-201ENSMUST00000113623 2339 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Tceanc-202ENSMUST00000112188 4050 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Upf3bQ3ULL6 Ikzf2-204ENSMUST00000188110 1365 ntTSL 5 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Ikzf2-208ENSMUST00000190855 1359 ntTSL 5 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 AC124732.3-201ENSMUST00000221835 1765 ntBASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Wwp2-204ENSMUST00000212205 2758 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Grin2b-202ENSMUST00000111905 7484 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Armcx4-201ENSMUST00000124226 7996 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Magee2-201ENSMUST00000033575 2316 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Gm10100-201ENSMUST00000179726 363 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Gm9369-201ENSMUST00000196009 733 ntBASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Gm44415-201ENSMUST00000204151 2112 ntBASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Gm45758-201ENSMUST00000212448 1006 ntBASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 AC153152.3-201ENSMUST00000222188 1135 ntBASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Hist1h2bl-201ENSMUST00000091756 381 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Cpt1c-201ENSMUST00000063761 2793 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Stk4-201ENSMUST00000018353 5232 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Olfr624-201ENSMUST00000062144 5731 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Slc45a4-202ENSMUST00000076224 4240 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Flad1-202ENSMUST00000107426 2238 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Pdgfrb-201ENSMUST00000025522 5407 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Rad51ap2-201ENSMUST00000124065 3175 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC11.79□□□□□ -0.52
Upf3bQ3ULL6 Nfe2l1-203ENSMUST00000107658 4219 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Gm42641-202ENSMUST00000160217 4248 ntAPPRIS P5 TSL 2 BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Bmp3-203ENSMUST00000200388 6609 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Pdcd10-205ENSMUST00000161137 1927 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Mpl-202ENSMUST00000102671 2934 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 U2af1l4-237ENSMUST00000167042 3007 ntAPPRIS P5 TSL 2 BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Gm12663-201ENSMUST00000118481 958 ntBASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Gm13937-201ENSMUST00000121000 988 ntBASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Gm28032-201ENSMUST00000184104 96 ntBASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Gm42588-201ENSMUST00000200538 1297 ntBASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 D9Wsu149-201ENSMUST00000214169 594 ntBASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Gm19009-201ENSMUST00000223072 823 ntBASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Gm5441-201ENSMUST00000186454 5181 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Upf3bQ3ULL6 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 87.1 ms