Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 BB187690-201ENSMUST00000198619 1176 ntBASIC12.78□□□□□ -0.36
Col1a1P11087 4930566F21Rik-201ENSMUST00000201177 1535 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Nxpe1-ps-201ENSMUST00000209981 1454 ntBASIC12.78□□□□□ -0.36
Col1a1P11087 Gm2716-201ENSMUST00000212350 643 ntBASIC12.78□□□□□ -0.36
Col1a1P11087 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Scgb2b2-201ENSMUST00000038835 520 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Col1a1P11087 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Col1a1P11087 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Wt1os-203ENSMUST00000172701 2960 ntTSL 2 BASIC12.78□□□□□ -0.36
Col1a1P11087 Gm43931-201ENSMUST00000204817 2870 ntBASIC12.78□□□□□ -0.36
Col1a1P11087 AC124561.1-202ENSMUST00000228652 1929 ntBASIC12.78□□□□□ -0.36
Col1a1P11087 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Col1a1P11087 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Col1a1P11087 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Col1a1P11087 C920021L13Rik-201ENSMUST00000120398 1723 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Col1a1P11087 Slc10a4-202ENSMUST00000201304 1419 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Col1a1P11087 Scgb1b29-201ENSMUST00000108094 282 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Il15ra-203ENSMUST00000114831 882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Gm12377-201ENSMUST00000118656 252 ntBASIC12.78□□□□□ -0.36
Col1a1P11087 Gm15373-201ENSMUST00000121495 214 ntBASIC12.78□□□□□ -0.36
Col1a1P11087 Gm14829-201ENSMUST00000121499 1138 ntBASIC12.78□□□□□ -0.36
Col1a1P11087 Gm15793-201ENSMUST00000121857 495 ntBASIC12.78□□□□□ -0.36
Col1a1P11087 3110039M20Rik-201ENSMUST00000127041 868 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 1700017J07Rik-201ENSMUST00000140241 473 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 D330041H03Rik-202ENSMUST00000180390 411 ntTSL 2 BASIC12.78□□□□□ -0.36
Col1a1P11087 Med11-201ENSMUST00000019067 902 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 1700113A16Rik-203ENSMUST00000200006 563 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 AC165260.2-201ENSMUST00000225371 395 ntBASIC12.78□□□□□ -0.36
Col1a1P11087 Rps14-201ENSMUST00000025511 683 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Gm10617-201ENSMUST00000098368 1172 ntBASIC12.78□□□□□ -0.36
Col1a1P11087 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col1a1P11087 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col1a1P11087 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Col1a1P11087 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Col1a1P11087 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col1a1P11087 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Col1a1P11087 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col1a1P11087 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col1a1P11087 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Col1a1P11087 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Col1a1P11087 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col1a1P11087 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col1a1P11087 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC12.77□□□□□ -0.37
Col1a1P11087 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Mrpl24-202ENSMUST00000119968 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Col1a1P11087 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 A930003A15Rik-201ENSMUST00000100083 746 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Gm16518-201ENSMUST00000117960 508 ntBASIC12.77□□□□□ -0.37
Col1a1P11087 Gm6517-201ENSMUST00000121056 511 ntBASIC12.77□□□□□ -0.37
Col1a1P11087 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC12.77□□□□□ -0.37
Col1a1P11087 Gm12254-201ENSMUST00000134617 471 ntBASIC12.77□□□□□ -0.37
Col1a1P11087 Gm15015-201ENSMUST00000135491 636 ntTSL 3 BASIC12.77□□□□□ -0.37
Col1a1P11087 Zfp961-204ENSMUST00000136516 601 ntTSL 2 BASIC12.77□□□□□ -0.37
Col1a1P11087 Gm15020-201ENSMUST00000147142 636 ntTSL 3 BASIC12.77□□□□□ -0.37
Col1a1P11087 Gm13780-201ENSMUST00000150482 1187 ntTSL 5 BASIC12.77□□□□□ -0.37
Col1a1P11087 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Gast-201ENSMUST00000017309 460 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 4930505M18Rik-201ENSMUST00000175854 1288 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 C430039J16Rik-201ENSMUST00000181148 658 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Gm5801-201ENSMUST00000182247 780 ntBASIC12.77□□□□□ -0.37
Col1a1P11087 Gm42423-201ENSMUST00000196396 670 ntTSL 3 BASIC12.77□□□□□ -0.37
Col1a1P11087 Gm44304-201ENSMUST00000200509 145 ntBASIC12.77□□□□□ -0.37
Col1a1P11087 Polr1d-204ENSMUST00000200993 1167 ntTSL 5 BASIC12.77□□□□□ -0.37
Col1a1P11087 AC107711.3-201ENSMUST00000228939 1035 ntBASIC12.77□□□□□ -0.37
Col1a1P11087 Rpl37-201ENSMUST00000045356 835 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 2010001K21Rik-201ENSMUST00000060680 519 ntBASIC12.77□□□□□ -0.37
Col1a1P11087 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Adgb-201ENSMUST00000045328 1893 ntTSL 2 BASIC12.77□□□□□ -0.37
Col1a1P11087 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Col1a1P11087 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col1a1P11087 Wdr46-ps-201ENSMUST00000200591 1712 ntBASIC12.77□□□□□ -0.37
Col1a1P11087 Gm43984-201ENSMUST00000204572 2864 ntBASIC12.77□□□□□ -0.37
Col1a1P11087 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Hectd2os-203ENSMUST00000142067 2662 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Atp5s-201ENSMUST00000021372 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms