Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm44196-203ENSMUST00000204359 1190 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Gm18862-201ENSMUST00000204643 933 ntBASIC12.91□□□□□ -0.34
Scn11aQ9R053 Gm35611-201ENSMUST00000205323 799 ntTSL 3 BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Thy1-205ENSMUST00000215156 460 ntTSL 5 BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Clrn1-201ENSMUST00000051408 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Rps9-201ENSMUST00000006496 751 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Mrgpra4-201ENSMUST00000087092 1259 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Cblb-203ENSMUST00000226593 3864 ntAPPRIS ALT2 BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Scn11aQ9R053 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Bcl2-202ENSMUST00000189999 2841 ntBASIC12.91□□□□□ -0.34
Scn11aQ9R053 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Scn11aQ9R053 Fhl1-202ENSMUST00000114768 1337 ntTSL 5 BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Slc25a17-201ENSMUST00000023040 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Prl8a1-202ENSMUST00000095926 1682 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Gm13169-201ENSMUST00000122090 1459 ntBASIC12.9□□□□□ -0.34
Scn11aQ9R053 Gm7701-201ENSMUST00000163185 1479 ntBASIC12.9□□□□□ -0.34
Scn11aQ9R053 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Ank2-214ENSMUST00000182547 2428 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Upp1-202ENSMUST00000101525 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Lyrm1-202ENSMUST00000106516 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Capns1-202ENSMUST00000108196 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Mapk8-202ENSMUST00000111942 927 ntTSL 5 BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Gm12397-201ENSMUST00000117674 615 ntBASIC12.9□□□□□ -0.34
Scn11aQ9R053 Gm15912-201ENSMUST00000128914 578 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Gm5254-201ENSMUST00000188353 977 ntBASIC12.9□□□□□ -0.34
Scn11aQ9R053 Gm5543-201ENSMUST00000193329 1091 ntBASIC12.9□□□□□ -0.34
Scn11aQ9R053 Gm38321-201ENSMUST00000195053 235 ntBASIC12.9□□□□□ -0.34
Scn11aQ9R053 Gm38349-201ENSMUST00000195732 462 ntBASIC12.9□□□□□ -0.34
Scn11aQ9R053 Madcam1-202ENSMUST00000217748 944 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Pebp1-201ENSMUST00000036951 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Kcne2-202ENSMUST00000113971 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Gm43052-201ENSMUST00000201451 1628 ntBASIC12.9□□□□□ -0.34
Scn11aQ9R053 Prim2-201ENSMUST00000027312 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Scn11aQ9R053 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 AC164099.2-201ENSMUST00000227795 2005 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Zscan21-201ENSMUST00000062350 2252 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Slitrk4-202ENSMUST00000114679 3513 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Sdcbp-204ENSMUST00000108374 1803 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Galm-201ENSMUST00000039205 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Scn11aQ9R053 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Scn11aQ9R053 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Scn11aQ9R053 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Gm29595-202ENSMUST00000187954 466 ntTSL 3 BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Gm37362-201ENSMUST00000194567 634 ntTSL 5 BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Gm36862-204ENSMUST00000223365 642 ntTSL 3 BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Gm5292-201ENSMUST00000073317 580 ntBASIC12.89□□□□□ -0.35
Scn11aQ9R053 Hcst-201ENSMUST00000075062 442 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Srp14-201ENSMUST00000009693 798 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 A330033J07Rik-201ENSMUST00000180921 2816 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Tnfrsf9-201ENSMUST00000030808 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Ccr6-202ENSMUST00000164411 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Hormad2-202ENSMUST00000109948 1969 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Gstm3-201ENSMUST00000004136 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Klf10-203ENSMUST00000227920 2144 ntBASIC12.89□□□□□ -0.35
Scn11aQ9R053 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Gm21939-201ENSMUST00000221137 2773 ntBASIC12.89□□□□□ -0.35
Scn11aQ9R053 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Gm26725-201ENSMUST00000180652 1113 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Rpl15-ps2-201ENSMUST00000184247 613 ntBASIC12.89□□□□□ -0.35
Scn11aQ9R053 Gm42803-201ENSMUST00000201051 451 ntBASIC12.89□□□□□ -0.35
Scn11aQ9R053 Tmem238l-203ENSMUST00000211300 930 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Scn11aQ9R053 AC154220.1-201ENSMUST00000225033 1705 ntBASIC12.89□□□□□ -0.35
Scn11aQ9R053 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Scn11aQ9R053 Rbbp5-201ENSMUST00000027700 3385 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Scn11aQ9R053 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Scn11aQ9R053 Gp2-201ENSMUST00000033255 1993 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Scn11aQ9R053 AC154197.1-201ENSMUST00000225136 1382 ntBASIC12.88□□□□□ -0.35
Scn11aQ9R053 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Scn11aQ9R053 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Scn11aQ9R053 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Scn11aQ9R053 4930593A02Rik-201ENSMUST00000181694 1437 ntTSL 5 BASIC12.88□□□□□ -0.35
Scn11aQ9R053 6430531B16Rik-202ENSMUST00000121412 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Scn11aQ9R053 Gm16210-201ENSMUST00000122161 610 ntBASIC12.88□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 73.3 ms