Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gm10288-201ENSMUST00000084614 537 ntBASIC10.39□□□□□ -0.75
Ddx28Q9CWT6 Adcy4-201ENSMUST00000002398 3444 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Ddx28Q9CWT6 Als2-201ENSMUST00000027178 6342 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Ddx28Q9CWT6 Ablim2-204ENSMUST00000114204 2953 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Ddx28Q9CWT6 Zfp280b-201ENSMUST00000061617 5097 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Ddx28Q9CWT6 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Ddx28Q9CWT6 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Ddx28Q9CWT6 Pde2a-201ENSMUST00000163751 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Ddx28Q9CWT6 9430064I24Rik-201ENSMUST00000206516 2669 ntBASIC10.39□□□□□ -0.75
Ddx28Q9CWT6 Pa2g4-202ENSMUST00000131728 2483 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Ddx28Q9CWT6 Dhx38-201ENSMUST00000042601 4463 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Ddx28Q9CWT6 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Slc7a3-203ENSMUST00000113710 2750 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Trpm1-201ENSMUST00000085222 5711 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Disp1-201ENSMUST00000003035 4984 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Gm37451-201ENSMUST00000194718 2167 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Gm15515-201ENSMUST00000117827 822 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Gm3329-201ENSMUST00000159873 556 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Mir7070-201ENSMUST00000183657 86 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Gm29164-201ENSMUST00000185454 1024 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Gm18827-201ENSMUST00000188341 790 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Ighv1-48-201ENSMUST00000191795 294 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 AU022133-201ENSMUST00000200601 873 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Gm18753-201ENSMUST00000201000 566 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Pxdn-208ENSMUST00000220271 6377 ntTSL 5 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Gm4978-201ENSMUST00000071565 801 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Tasp1-203ENSMUST00000110079 2258 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Txk-201ENSMUST00000113604 2260 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Nol8-209ENSMUST00000223467 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Zfp454-201ENSMUST00000050595 2059 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Gm37122-201ENSMUST00000195313 1567 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Zfp423-203ENSMUST00000165770 4334 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Tmem184b-205ENSMUST00000228002 3315 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Bsn-201ENSMUST00000035208 15938 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Ar-201ENSMUST00000052837 10048 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 AC159308.2-201ENSMUST00000213592 2325 ntBASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Bcl2l11-205ENSMUST00000110341 5036 ntAPPRIS P4 TSL 1 (best) BASIC10.38□□□□□ -0.75
Ddx28Q9CWT6 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 1700018A04Rik-204ENSMUST00000221561 2569 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Exoc4-202ENSMUST00000090381 2598 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Gm28774-201ENSMUST00000187087 1498 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Copb1-201ENSMUST00000033012 3346 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 N6amt1-204ENSMUST00000120284 3473 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Adcy7-202ENSMUST00000168545 5937 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Ablim1-212ENSMUST00000111558 3123 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Prkd2-202ENSMUST00000168093 3251 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Kif3c-201ENSMUST00000020999 6791 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Sgsm1-202ENSMUST00000057209 4339 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Gm8199-201ENSMUST00000121323 823 ntBASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC10.37□□□□□ -0.75
Ddx28Q9CWT6 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms