Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Cd300lg-201ENSMUST00000017453 2353 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 C030037D09Rik-203ENSMUST00000138007 3220 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Lvrn-201ENSMUST00000025358 3219 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gpsm1-201ENSMUST00000066889 3432 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Zfp652-201ENSMUST00000091565 2663 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Pabpc4-201ENSMUST00000078734 2700 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Pde6c-202ENSMUST00000112329 2895 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Txlng-201ENSMUST00000041370 3862 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Cd2bp2-203ENSMUST00000205316 2912 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Rasgrp4-213ENSMUST00000204845 3182 ntTSL 5 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 D2hgdh-201ENSMUST00000097633 3232 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Fam13c-201ENSMUST00000062883 3262 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Aldh1a3-201ENSMUST00000015278 3443 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Zfp280d-211ENSMUST00000184036 3459 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Cbfa2t2-204ENSMUST00000109725 6080 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Irf9-202ENSMUST00000130697 2459 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Meig1-202ENSMUST00000115081 421 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Gm12795-201ENSMUST00000117594 539 ntBASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Gm25072-201ENSMUST00000175233 235 ntBASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Gm9358-201ENSMUST00000183067 927 ntBASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Mir8115-201ENSMUST00000184992 119 ntBASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Gm28324-201ENSMUST00000187913 264 ntBASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Gm9645-201ENSMUST00000197131 792 ntBASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Gm44980-201ENSMUST00000205826 314 ntBASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 AC166344.1-201ENSMUST00000223745 674 ntBASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Apbb1-217ENSMUST00000191011 2712 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Slc7a4-201ENSMUST00000063544 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Arvcf-203ENSMUST00000115612 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Celf1-205ENSMUST00000111449 4441 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Gm18210-201ENSMUST00000209001 1524 ntBASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 1810014B01Rik-202ENSMUST00000218095 1622 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Oxsm-201ENSMUST00000022311 3759 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Cdk5rap1-201ENSMUST00000028990 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Ifit1bl1-202ENSMUST00000168254 2215 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
Sh3rf1Q69ZI1 Slx1b-203ENSMUST00000144897 3152 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Gm1848-201ENSMUST00000120711 789 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Gm13366-201ENSMUST00000122198 970 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Wbp1l-204ENSMUST00000138302 3900 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Tctex1d1-205ENSMUST00000140654 891 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Gm23045-201ENSMUST00000175041 96 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Prox1-203ENSMUST00000177288 3144 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Gm10731-201ENSMUST00000181171 448 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Gm4654-201ENSMUST00000183305 982 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Gm37299-201ENSMUST00000193951 826 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Gm43372-201ENSMUST00000202662 3016 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Gm18539-201ENSMUST00000204745 1090 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Gm2553-201ENSMUST00000215986 605 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Prrxl1-205ENSMUST00000228878 723 ntBASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Cnga4-201ENSMUST00000033187 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Tmprss2-201ENSMUST00000000395 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Sh3rf1Q69ZI1 Psd-201ENSMUST00000041391 3900 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms