Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm14817-201ENSMUST00000148522 643 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 Bud31-203ENSMUST00000160075 928 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Cux1P53564 H2al1e-201ENSMUST00000178979 494 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Cux1P53564 1810018F18Rik-201ENSMUST00000188253 277 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 H2al1b-201ENSMUST00000189531 495 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Cux1P53564 Gm4430-202ENSMUST00000193902 1041 ntBASIC16.72■□□□□ 0.27
Cux1P53564 Gm37362-201ENSMUST00000194567 634 ntTSL 5 BASIC16.72■□□□□ 0.27
Cux1P53564 Gm31466-201ENSMUST00000195457 916 ntTSL 3 BASIC16.72■□□□□ 0.27
Cux1P53564 Gm42423-201ENSMUST00000196396 670 ntTSL 3 BASIC16.72■□□□□ 0.27
Cux1P53564 Rhoc-205ENSMUST00000196817 877 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
Cux1P53564 Smim23-201ENSMUST00000020508 620 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 Klra9-201ENSMUST00000071554 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 Gm28624-201ENSMUST00000186430 2131 ntBASIC16.72■□□□□ 0.27
Cux1P53564 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Cux1P53564 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 Gm4865-201ENSMUST00000196284 1309 ntBASIC16.72■□□□□ 0.27
Cux1P53564 Elmod3-202ENSMUST00000114069 2164 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 Cblb-203ENSMUST00000226593 3864 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
Cux1P53564 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Cux1P53564 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 Gas7-202ENSMUST00000108680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
Cux1P53564 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Cst10-202ENSMUST00000109938 729 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Cux1P53564 Gm11521-201ENSMUST00000143302 329 ntTSL 3 BASIC16.71■□□□□ 0.27
Cux1P53564 Gm13780-201ENSMUST00000150482 1187 ntTSL 5 BASIC16.71■□□□□ 0.27
Cux1P53564 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Gm29157-201ENSMUST00000188753 612 ntBASIC16.71■□□□□ 0.27
Cux1P53564 Gm21631-201ENSMUST00000195041 754 ntBASIC16.71■□□□□ 0.27
Cux1P53564 Gm18256-201ENSMUST00000209087 907 ntBASIC16.71■□□□□ 0.27
Cux1P53564 Gm45363-201ENSMUST00000210196 1294 ntBASIC16.71■□□□□ 0.27
Cux1P53564 Gm45308-201ENSMUST00000210610 415 ntBASIC16.71■□□□□ 0.27
Cux1P53564 AC127583.1-201ENSMUST00000224351 540 ntBASIC16.71■□□□□ 0.27
Cux1P53564 Cst10-201ENSMUST00000047008 804 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Cux1P53564 Mrps14-202ENSMUST00000097193 787 ntTSL 2 BASIC16.71■□□□□ 0.27
Cux1P53564 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Dmtf1-201ENSMUST00000071921 3806 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Cux1P53564 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cux1P53564 Phc1-204ENSMUST00000159252 3744 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Cux1P53564 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.26
Cux1P53564 Gm46355-201ENSMUST00000221434 1671 ntTSL 5 BASIC16.71■□□□□ 0.26
Cux1P53564 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
Cux1P53564 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Cux1P53564 Gm24470-201ENSMUST00000104486 132 ntBASIC16.7■□□□□ 0.26
Cux1P53564 Gstm6-204ENSMUST00000106684 1179 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC16.7■□□□□ 0.26
Cux1P53564 Gm13842-202ENSMUST00000156331 865 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Gm17782-201ENSMUST00000174345 880 ntBASIC16.7■□□□□ 0.26
Cux1P53564 Rps18-206ENSMUST00000174609 527 ntTSL 2 BASIC16.7■□□□□ 0.26
Cux1P53564 Vmn2r-ps9-201ENSMUST00000177446 1099 ntBASIC16.7■□□□□ 0.26
Cux1P53564 Gsdmcl2-202ENSMUST00000185391 796 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Tex35-206ENSMUST00000187546 856 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Cux1P53564 Gm37597-201ENSMUST00000191853 382 ntBASIC16.7■□□□□ 0.26
Cux1P53564 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC16.7■□□□□ 0.26
Cux1P53564 Gm34248-201ENSMUST00000200027 474 ntBASIC16.7■□□□□ 0.26
Cux1P53564 AC153379.1-201ENSMUST00000218174 485 ntTSL 3 BASIC16.7■□□□□ 0.26
Cux1P53564 CU025215.1-201ENSMUST00000222986 603 ntBASIC16.7■□□□□ 0.26
Cux1P53564 Ssna1-201ENSMUST00000028342 862 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Gm5148-201ENSMUST00000079755 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Cux1P53564 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Slc35b3-201ENSMUST00000021870 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC16.7■□□□□ 0.26
Cux1P53564 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Rffl-201ENSMUST00000021036 1719 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Vbp1-201ENSMUST00000033540 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Gm42851-201ENSMUST00000201325 1411 ntBASIC16.7■□□□□ 0.26
Cux1P53564 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC16.7■□□□□ 0.26
Cux1P53564 Rab29-202ENSMUST00000112386 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Gm11540-201ENSMUST00000117457 780 ntBASIC16.7■□□□□ 0.26
Cux1P53564 Gm13777-201ENSMUST00000118208 345 ntBASIC16.7■□□□□ 0.26
Cux1P53564 Gm15793-201ENSMUST00000121857 495 ntBASIC16.7■□□□□ 0.26
Cux1P53564 Gm15472-201ENSMUST00000141652 847 ntTSL 5 BASIC16.7■□□□□ 0.26
Cux1P53564 Gm5501-201ENSMUST00000165917 832 ntBASIC16.7■□□□□ 0.26
Cux1P53564 Gm22662-201ENSMUST00000175290 256 ntBASIC16.7■□□□□ 0.26
Cux1P53564 Rps14-201ENSMUST00000025511 683 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Mir194-2-201ENSMUST00000083648 86 ntBASIC16.7■□□□□ 0.26
Cux1P53564 Olfr1219-201ENSMUST00000099797 936 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Cux1P53564 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Cux1P53564 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Gfm2-202ENSMUST00000042084 3074 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cux1P53564 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Gm26637-201ENSMUST00000180880 2289 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 69.3 ms