Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Atf7ip2-201ENSMUST00000044005 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Abhd18-201ENSMUST00000108077 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Immt-205ENSMUST00000166938 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Col20a1-202ENSMUST00000149179 3867 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Arid2-201ENSMUST00000096250 8507 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Sh2d5-201ENSMUST00000105823 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Adcy6-201ENSMUST00000096224 6038 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Gm12799-201ENSMUST00000118151 2560 ntBASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Pced1a-201ENSMUST00000089581 3496 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Gm3765-201ENSMUST00000130985 1447 ntBASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Gm24398-201ENSMUST00000157870 109 ntBASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 CT009536.2-201ENSMUST00000225370 665 ntBASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Psd-201ENSMUST00000041391 3900 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Psd-202ENSMUST00000096029 3903 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Fbrs-201ENSMUST00000048896 2650 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Dzip1l-203ENSMUST00000112885 4350 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Prdm16-203ENSMUST00000097759 8544 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Smc1aQ9CU62 Tjp1-201ENSMUST00000032729 6102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Prkd2-202ENSMUST00000168093 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Zfand2a-201ENSMUST00000079996 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Mical3-217ENSMUST00000207889 9204 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm14441-201ENSMUST00000121960 540 ntBASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm37981-201ENSMUST00000194280 535 ntBASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm44158-201ENSMUST00000203881 505 ntBASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm45113-201ENSMUST00000207518 165 ntBASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm45120-201ENSMUST00000208880 408 ntBASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm10254-201ENSMUST00000052888 867 ntBASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Klhl18-205ENSMUST00000198400 4638 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Zfp354b-201ENSMUST00000109124 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Acin1-203ENSMUST00000111484 4048 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Scaf1-201ENSMUST00000085383 4293 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gm37348-201ENSMUST00000193104 1789 ntBASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gpr101-201ENSMUST00000057645 5410 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Hepacam-201ENSMUST00000051839 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Ppat-202ENSMUST00000140076 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Plcd4-205ENSMUST00000113749 4648 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Dyrk4-202ENSMUST00000078521 2252 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Ppp1r10-201ENSMUST00000087210 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Armc9-201ENSMUST00000027434 5127 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Vti1a-201ENSMUST00000095950 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Smc1aQ9CU62 Limd1-201ENSMUST00000026269 4848 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Smc1aQ9CU62 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Smc1aQ9CU62 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Smc1aQ9CU62 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
Smc1aQ9CU62 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
Smc1aQ9CU62 Amotl1-201ENSMUST00000013220 8957 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Smc1aQ9CU62 Ccdc93-202ENSMUST00000112621 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms