Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 4930486N12Rik-201ENSMUST00000206668 632 ntBASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Gm18001-201ENSMUST00000212023 688 ntBASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Olfr692-202ENSMUST00000217827 1126 ntBASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Olfr692-201ENSMUST00000098152 1126 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Micu1-212ENSMUST00000179709 1814 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Zfat-205ENSMUST00000162173 3561 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Ppm1b-203ENSMUST00000112305 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 4921524J17Rik-201ENSMUST00000047749 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Phc1-204ENSMUST00000159252 3744 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Pck2-205ENSMUST00000226352 2784 ntBASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Gm15982-201ENSMUST00000121681 554 ntBASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Gm14718-201ENSMUST00000138082 752 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Tmem204-202ENSMUST00000153745 902 ntTSL 2 BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Mir432-201ENSMUST00000157230 75 ntBASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Gm5244-201ENSMUST00000164001 339 ntBASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Gm25872-201ENSMUST00000177784 100 ntBASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Auts2-216ENSMUST00000185450 144 ntTSL 5 BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Gm28671-201ENSMUST00000187036 692 ntBASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Selenos-204ENSMUST00000206044 911 ntTSL 3 BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Gm39091-201ENSMUST00000206189 553 ntTSL 2 BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 AC138716.2-201ENSMUST00000226670 1016 ntBASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Olfr1230-201ENSMUST00000099787 918 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Tbp-203ENSMUST00000118001 1652 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Cblb-203ENSMUST00000226593 3864 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 A930016O22Rik-202ENSMUST00000208685 2349 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Eef1b2-204ENSMUST00000129339 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Tekt2-202ENSMUST00000102616 1542 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Gm37969-201ENSMUST00000195777 3409 ntBASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Gm46430-201ENSMUST00000220478 1989 ntTSL 3 BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Usp40Q8BWR4 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Dab2-203ENSMUST00000110663 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Rgr-203ENSMUST00000225070 4704 ntBASIC15.1■□□□□ 0.01
Usp40Q8BWR4 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Mir1249-201ENSMUST00000116791 98 ntBASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Gm15625-201ENSMUST00000117617 1093 ntBASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Gm25288-201ENSMUST00000122800 265 ntBASIC15.1■□□□□ 0.01
Usp40Q8BWR4 7330404K18Rik-201ENSMUST00000125558 487 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Gm37988-201ENSMUST00000155020 825 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Mocs2-201ENSMUST00000015680 1152 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Gm9574-201ENSMUST00000173127 845 ntBASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Gm25998-201ENSMUST00000175397 53 ntBASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Gm37197-201ENSMUST00000195607 401 ntBASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Gm43244-201ENSMUST00000196994 1285 ntBASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Lsm3-205ENSMUST00000206947 618 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Ppm1a-205ENSMUST00000222896 1103 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 AC154461.3-201ENSMUST00000224831 573 ntBASIC15.1■□□□□ 0.01
Usp40Q8BWR4 AC121567.1-201ENSMUST00000227213 842 ntBASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Cypt12-201ENSMUST00000029080 550 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Mrpl33-201ENSMUST00000031024 478 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Rnasek-201ENSMUST00000040428 611 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Olfr1313-201ENSMUST00000099599 938 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Zfp14-201ENSMUST00000077787 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Pmp22-201ENSMUST00000018361 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Gm38344-201ENSMUST00000195306 1353 ntBASIC15.1■□□□□ 0.01
Usp40Q8BWR4 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Slc38a5-201ENSMUST00000033512 1868 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Usp40Q8BWR4 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Slc6a12-209ENSMUST00000171008 1674 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Gm45124-201ENSMUST00000206723 2755 ntBASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Olfr1156-202ENSMUST00000216191 3300 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms