Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Dzip1l-204ENSMUST00000112886 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Atg9a-205ENSMUST00000188347 4041 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Unc5cl-201ENSMUST00000074574 2838 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gtf2ird1-204ENSMUST00000100652 3693 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Nos3-202ENSMUST00000115090 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Tmem154-201ENSMUST00000107682 3342 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 CT868720.1-201ENSMUST00000223069 2544 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm8731-201ENSMUST00000118088 412 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm12129-201ENSMUST00000120104 1147 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm4310-201ENSMUST00000177847 889 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Mir8093-201ENSMUST00000185043 137 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm29499-201ENSMUST00000189151 486 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm28329-201ENSMUST00000191208 689 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm29171-201ENSMUST00000191397 486 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm38210-201ENSMUST00000191944 809 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm34023-201ENSMUST00000195539 217 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 AC113082.1-201ENSMUST00000217324 327 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 AC124408.1-201ENSMUST00000228938 707 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 March10-201ENSMUST00000049995 3074 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Exoc7-202ENSMUST00000106411 3205 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Usp17le-202ENSMUST00000211384 1885 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm13910-201ENSMUST00000121752 1428 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Fam83a-202ENSMUST00000160942 2876 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gm43999-201ENSMUST00000204286 2889 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Pnkd-202ENSMUST00000087225 2859 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Uimc1-204ENSMUST00000127195 2936 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Msh3-201ENSMUST00000022220 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Prpf6-203ENSMUST00000136481 3048 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 AC154528.2-201ENSMUST00000228432 3023 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Myom3-201ENSMUST00000105854 5575 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gfm2-201ENSMUST00000022170 3089 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Unc45a-202ENSMUST00000107368 3635 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Trmt44-201ENSMUST00000030980 3790 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Sec24d-201ENSMUST00000047923 3903 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Armc8-202ENSMUST00000185524 2820 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gm44913-201ENSMUST00000208060 2990 ntBASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Tie1-203ENSMUST00000184261 4234 ntTSL 2 BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Dpf2-202ENSMUST00000118623 2406 ntTSL 5 BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gm11949-201ENSMUST00000117640 372 ntBASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gm15352-201ENSMUST00000118696 270 ntBASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Mir7076-201ENSMUST00000183519 74 ntBASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gm5852-201ENSMUST00000194119 1021 ntBASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gm5542-201ENSMUST00000195485 1089 ntBASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gm5714-201ENSMUST00000197343 566 ntBASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gm6450-201ENSMUST00000200896 574 ntBASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 AC156501.1-201ENSMUST00000228219 270 ntBASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Prr9-201ENSMUST00000070284 1183 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Mirlet7i-201ENSMUST00000083472 85 ntBASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Tcp10a-202ENSMUST00000128533 2589 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 1700017B05Rik-201ENSMUST00000034846 4152 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gm5380-201ENSMUST00000119296 2136 ntBASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Armcx2-202ENSMUST00000113193 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Slc9a8-201ENSMUST00000047815 4521 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Snx31-203ENSMUST00000161202 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Gm45041-201ENSMUST00000207366 3108 ntBASIC11.24□□□□□ -0.61
Sh3rf1Q69ZI1 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms