Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Abca2-201ENSMUST00000102919 8033 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Scaf4Q6PFF0 Tpp2-201ENSMUST00000087933 4649 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Scaf4Q6PFF0 Mdm1-203ENSMUST00000164077 2922 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Scaf4Q6PFF0 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Scaf4Q6PFF0 Slc9a8-202ENSMUST00000073873 4429 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Scaf4Q6PFF0 Ttc39a-202ENSMUST00000106618 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Scaf4Q6PFF0 3425401B19Rik-201ENSMUST00000096038 5547 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Scaf4Q6PFF0 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC10.9□□□□□ -0.67
Scaf4Q6PFF0 Gm45699-201ENSMUST00000212838 1576 ntTSL 2 BASIC10.9□□□□□ -0.67
Scaf4Q6PFF0 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC10.9□□□□□ -0.67
Scaf4Q6PFF0 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Scaf4Q6PFF0 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
Scaf4Q6PFF0 Gm9915-201ENSMUST00000066196 1383 ntBASIC10.9□□□□□ -0.67
Scaf4Q6PFF0 Hmgb2-201ENSMUST00000067925 2628 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 March10-204ENSMUST00000138977 2979 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Wwp2-204ENSMUST00000212205 2758 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Arhgap33-204ENSMUST00000207860 4396 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm6768-201ENSMUST00000022467 1878 ntBASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Ncam1-201ENSMUST00000114476 2567 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Tram2-201ENSMUST00000037998 6492 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Rasgrp4-211ENSMUST00000203380 3077 ntTSL 5 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Ampd2-201ENSMUST00000078912 3368 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Slc45a4-202ENSMUST00000076224 4240 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Mkks-202ENSMUST00000110089 3178 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Plekhg4-206ENSMUST00000214056 3654 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm17151-201ENSMUST00000105760 367 ntTSL 3 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm8731-201ENSMUST00000118088 412 ntBASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm14716-201ENSMUST00000120138 718 ntBASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm8199-201ENSMUST00000121323 823 ntBASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm6039-201ENSMUST00000121667 1250 ntBASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm21778-201ENSMUST00000178779 471 ntBASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Mir99ahg-209ENSMUST00000182820 835 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm29067-201ENSMUST00000190821 470 ntBASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm37259-201ENSMUST00000193903 849 ntBASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm44364-201ENSMUST00000198368 141 ntBASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm44974-201ENSMUST00000206387 1279 ntBASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm31941-201ENSMUST00000209689 350 ntBASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 AC134860.1-201ENSMUST00000224867 660 ntBASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm4763-201ENSMUST00000081657 882 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Clcn6-205ENSMUST00000137724 5198 ntAPPRIS ALT1 TSL 5 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Dclk1-213ENSMUST00000199702 2922 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Ptcd1-201ENSMUST00000031628 3087 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Elmo2-201ENSMUST00000071699 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Ap1m2-201ENSMUST00000003397 1706 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Tfam-201ENSMUST00000092430 4167 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Sox13-203ENSMUST00000144386 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Dcaf11-206ENSMUST00000128490 2660 ntAPPRIS P2 TSL 2 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Epx-201ENSMUST00000049768 2689 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm16677-201ENSMUST00000181229 2174 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Gm27174-201ENSMUST00000184493 2174 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Ass1-201ENSMUST00000102840 1696 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 4921507G05Rik-201ENSMUST00000181348 1653 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Scaf4Q6PFF0 Fam90a1b-201ENSMUST00000044989 2939 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Sh3gl2-204ENSMUST00000107189 3231 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Dgkh-201ENSMUST00000074729 3967 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Ppp1r3c-201ENSMUST00000087321 2719 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Spg20-203ENSMUST00000117341 2957 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Bace1-202ENSMUST00000078111 4041 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Mpp1-202ENSMUST00000114091 1558 ntTSL 2 BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Nos3-202ENSMUST00000115090 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm13461-201ENSMUST00000120980 662 ntBASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm12407-201ENSMUST00000180219 324 ntBASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm27177-201ENSMUST00000183339 2946 ntTSL 5 BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm29499-201ENSMUST00000189151 486 ntBASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm28329-201ENSMUST00000191208 689 ntBASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm29171-201ENSMUST00000191397 486 ntBASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm40634-201ENSMUST00000214129 2001 ntTSL 5 BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gm9111-201ENSMUST00000219394 709 ntBASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Tas2r125-201ENSMUST00000076119 937 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Scaf4Q6PFF0 Gpi1-201ENSMUST00000038027 2884 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms