Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Ccar2-201ENSMUST00000035612 3725 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Cit-202ENSMUST00000102560 6213 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Mtmr7-205ENSMUST00000174205 2679 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Spaar-201ENSMUST00000131248 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Hk3-201ENSMUST00000052949 3219 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Nrg1-213ENSMUST00000208617 2787 ntTSL 5 BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Ippk-202ENSMUST00000220447 4421 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sh3rf1Q69ZI1 Plin2-201ENSMUST00000000466 1888 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sh3rf1Q69ZI1 Zfp606-202ENSMUST00000123589 3509 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Sh3rf1Q69ZI1 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sh3rf1Q69ZI1 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Sh3rf1Q69ZI1 Nucks1-201ENSMUST00000062264 5998 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sh3rf1Q69ZI1 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sh3rf1Q69ZI1 Slc18a1-201ENSMUST00000037478 3115 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sh3rf1Q69ZI1 Olfr1349-207ENSMUST00000216447 2448 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Sh3rf1Q69ZI1 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sh3rf1Q69ZI1 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Icam1-201ENSMUST00000086399 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Gm12579-201ENSMUST00000118040 783 ntBASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Gm15207-201ENSMUST00000119259 442 ntBASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Gm27910-201ENSMUST00000185004 107 ntBASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Gm5982-201ENSMUST00000196234 512 ntBASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Gm31409-201ENSMUST00000209894 710 ntTSL 5 BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Gm10752-201ENSMUST00000218348 729 ntBASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 AC129219.2-201ENSMUST00000224324 701 ntBASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Snora73b-201ENSMUST00000083419 205 ntBASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Lman1-201ENSMUST00000048260 3563 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Pygl-201ENSMUST00000071250 2825 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Gm45234-201ENSMUST00000129411 4359 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Ints10-201ENSMUST00000034328 4201 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Mkks-202ENSMUST00000110089 3178 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Ntrk3-205ENSMUST00000193002 2678 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Syn2-203ENSMUST00000203450 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Cfap54-201ENSMUST00000020200 2473 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Tmem184b-202ENSMUST00000178522 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Kcne2-201ENSMUST00000047383 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Ncam1-203ENSMUST00000192584 2525 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 A330033J07Rik-201ENSMUST00000180921 2816 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sh3rf1Q69ZI1 Rhoj-203ENSMUST00000118966 4892 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Frmd4b-201ENSMUST00000032146 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Gm44826-201ENSMUST00000207648 2332 ntBASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Arhgap33os-201ENSMUST00000124276 2648 ntTSL 2 BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Zfp354b-201ENSMUST00000109124 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Git1-202ENSMUST00000100812 3476 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Gtf2i-219ENSMUST00000174155 4141 ntAPPRIS P4 TSL 2 BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 n-R5s64-201ENSMUST00000102019 119 ntBASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Gm11892-201ENSMUST00000117711 1202 ntBASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Gm43186-201ENSMUST00000198130 824 ntBASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Gm18363-201ENSMUST00000221671 730 ntBASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 AC115122.1-201ENSMUST00000224850 1040 ntBASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Odf2l-202ENSMUST00000098538 2564 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 CT010447.1-201ENSMUST00000225657 1608 ntBASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Sorbs3-203ENSMUST00000227653 3061 ntAPPRIS ALT2 BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Fam234b-201ENSMUST00000111915 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Dnali1-201ENSMUST00000036383 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Gm1840-201ENSMUST00000051687 1432 ntBASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Timd4-201ENSMUST00000068877 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sh3rf1Q69ZI1 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Serac1-202ENSMUST00000097432 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Plekhg4-206ENSMUST00000214056 3654 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Dhx34-202ENSMUST00000118795 4076 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gnas-223ENSMUST00000185956 3729 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Gnas-224ENSMUST00000186907 3729 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 AC123738.2-201ENSMUST00000223791 1899 ntBASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Adam12-201ENSMUST00000067680 7675 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sh3rf1Q69ZI1 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 80.8 ms