Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Cdhr4-208ENSMUST00000176373 492 ntTSL 5 BASIC14.29□□□□□ -0.12
Trim28Q62318 1700084F23Rik-202ENSMUST00000188461 747 ntTSL 3 BASIC14.29□□□□□ -0.12
Trim28Q62318 Gm42423-201ENSMUST00000196396 670 ntTSL 3 BASIC14.29□□□□□ -0.12
Trim28Q62318 Gm43778-201ENSMUST00000199438 199 ntBASIC14.29□□□□□ -0.12
Trim28Q62318 Gm18010-201ENSMUST00000203553 202 ntBASIC14.29□□□□□ -0.12
Trim28Q62318 Ghrl-204ENSMUST00000203770 891 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Gm44511-201ENSMUST00000204394 678 ntAPPRIS P5 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Gm44511-202ENSMUST00000204423 678 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Gm45094-201ENSMUST00000207013 617 ntBASIC14.29□□□□□ -0.12
Trim28Q62318 Bcap31-201ENSMUST00000002091 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Gm45542-201ENSMUST00000210456 438 ntTSL 2 BASIC14.29□□□□□ -0.12
Trim28Q62318 AC153962.2-201ENSMUST00000219417 550 ntBASIC14.29□□□□□ -0.12
Trim28Q62318 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Ttc24-202ENSMUST00000064550 671 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Ptges3l-201ENSMUST00000093933 748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Gm6478-201ENSMUST00000099450 742 ntBASIC14.29□□□□□ -0.12
Trim28Q62318 Hectd2os-203ENSMUST00000142067 2662 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Gm8122-201ENSMUST00000165988 1404 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Trim28Q62318 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC14.29□□□□□ -0.12
Trim28Q62318 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC14.29□□□□□ -0.12
Trim28Q62318 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Trim28Q62318 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Trim28Q62318 CT573086.2-201ENSMUST00000227277 4992 ntBASIC14.29□□□□□ -0.12
Trim28Q62318 Tbp-203ENSMUST00000118001 1652 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Eif2s3y-201ENSMUST00000091197 1836 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Ccin-201ENSMUST00000095107 1941 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Trim28Q62318 Plekhg5-203ENSMUST00000105662 3933 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trim28Q62318 Edn1-201ENSMUST00000021796 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trim28Q62318 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Csde1-207ENSMUST00000197827 2671 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
Trim28Q62318 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC14.28□□□□□ -0.12
Trim28Q62318 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Stau2-202ENSMUST00000054668 2907 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Trim28Q62318 Scnn1g-201ENSMUST00000000221 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC14.28□□□□□ -0.12
Trim28Q62318 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Trim28Q62318 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Trim28Q62318 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Gm12570-201ENSMUST00000122047 1030 ntBASIC14.28□□□□□ -0.12
Trim28Q62318 Gm26550-201ENSMUST00000180699 1184 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Adh6-ps1-202ENSMUST00000196293 754 ntBASIC14.28□□□□□ -0.12
Trim28Q62318 Gm42851-201ENSMUST00000201325 1411 ntBASIC14.28□□□□□ -0.12
Trim28Q62318 Gm31108-201ENSMUST00000204101 1633 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Gm45135-201ENSMUST00000206787 1184 ntBASIC14.28□□□□□ -0.12
Trim28Q62318 Gm32939-201ENSMUST00000222336 843 ntTSL 3 BASIC14.28□□□□□ -0.12
Trim28Q62318 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC14.28□□□□□ -0.12
Trim28Q62318 AC124581.2-201ENSMUST00000225459 282 ntBASIC14.28□□□□□ -0.12
Trim28Q62318 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Rep15-201ENSMUST00000036194 1662 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Trim28Q62318 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Gm9791-201ENSMUST00000060997 447 ntBASIC14.28□□□□□ -0.12
Trim28Q62318 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Trim28Q62318 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim28Q62318 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim28Q62318 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim28Q62318 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC14.27□□□□□ -0.12
Trim28Q62318 Gm28624-201ENSMUST00000186430 2131 ntBASIC14.27□□□□□ -0.12
Trim28Q62318 Gm42521-201ENSMUST00000199190 2040 ntBASIC14.27□□□□□ -0.12
Trim28Q62318 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Trim28Q62318 Gm37849-201ENSMUST00000194722 1881 ntBASIC14.27□□□□□ -0.12
Trim28Q62318 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC14.27□□□□□ -0.12
Trim28Q62318 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim28Q62318 Ppm1b-203ENSMUST00000112305 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim28Q62318 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim28Q62318 Hsd3b3-204ENSMUST00000107019 1533 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Trim28Q62318 Gm12474-201ENSMUST00000122898 1410 ntTSL 2 BASIC14.27□□□□□ -0.12
Trim28Q62318 Myadm-202ENSMUST00000164553 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim28Q62318 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim28Q62318 Gm42970-201ENSMUST00000196407 1352 ntBASIC14.27□□□□□ -0.12
Trim28Q62318 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim28Q62318 S100a3-201ENSMUST00000001047 712 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC14.27□□□□□ -0.13
Trim28Q62318 Gm13707-201ENSMUST00000123663 600 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 Gm15287-201ENSMUST00000132564 751 ntTSL 2 BASIC14.27□□□□□ -0.13
Trim28Q62318 Gm14320-201ENSMUST00000137275 1023 ntTSL 3 BASIC14.27□□□□□ -0.13
Trim28Q62318 Fam229b-208ENSMUST00000139743 679 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Trim28Q62318 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC14.27□□□□□ -0.13
Trim28Q62318 Gm25872-201ENSMUST00000177784 100 ntBASIC14.27□□□□□ -0.13
Trim28Q62318 Dnajc4-202ENSMUST00000179118 840 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 Gm9625-201ENSMUST00000180422 955 ntBASIC14.27□□□□□ -0.13
Trim28Q62318 Gm16619-201ENSMUST00000181817 1210 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms