Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Olfr889-201ENSMUST00000072290 945 ntTSL 5 BASIC12.87□□□□□ -0.35
Traf1P39428 Gm38140-201ENSMUST00000193617 2755 ntBASIC12.87□□□□□ -0.35
Traf1P39428 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 1700123L14Rik-201ENSMUST00000090061 1747 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Traf1P39428 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC12.87□□□□□ -0.35
Traf1P39428 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Traf1P39428 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 AC174678.2-201ENSMUST00000156420 3275 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Traf1P39428 Zfp957-201ENSMUST00000040802 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Gm29684-201ENSMUST00000220248 1982 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 4732490B19Rik-201ENSMUST00000130373 2446 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC12.87□□□□□ -0.35
Traf1P39428 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Gm44573-201ENSMUST00000191753 2370 ntBASIC12.86□□□□□ -0.35
Traf1P39428 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Traf1P39428 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Gm15784-201ENSMUST00000120260 1462 ntBASIC12.86□□□□□ -0.35
Traf1P39428 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
Traf1P39428 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Pemt-202ENSMUST00000102692 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Gm24791-201ENSMUST00000104284 131 ntBASIC12.86□□□□□ -0.35
Traf1P39428 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Gm12389-201ENSMUST00000117696 418 ntBASIC12.86□□□□□ -0.35
Traf1P39428 Gm12990-201ENSMUST00000120372 468 ntBASIC12.86□□□□□ -0.35
Traf1P39428 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC12.86□□□□□ -0.35
Traf1P39428 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC12.86□□□□□ -0.35
Traf1P39428 Gm16165-201ENSMUST00000160140 795 ntBASIC12.86□□□□□ -0.35
Traf1P39428 Gm17192-201ENSMUST00000169031 511 ntBASIC12.86□□□□□ -0.35
Traf1P39428 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC12.86□□□□□ -0.35
Traf1P39428 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC12.86□□□□□ -0.35
Traf1P39428 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC12.86□□□□□ -0.35
Traf1P39428 Ly86-201ENSMUST00000021860 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Traf1P39428 1810014B01Rik-202ENSMUST00000218095 1622 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Gm14820-201ENSMUST00000126286 1449 ntTSL 3 BASIC12.86□□□□□ -0.35
Traf1P39428 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC12.86□□□□□ -0.35
Traf1P39428 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Traf1P39428 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Traf1P39428 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Traf1P39428 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC12.85□□□□□ -0.35
Traf1P39428 Slc38a3-203ENSMUST00000177567 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Slc38a3-209ENSMUST00000193932 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Ceacam9-201ENSMUST00000001984 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 AC121870.2-201ENSMUST00000214343 1870 ntBASIC12.85□□□□□ -0.35
Traf1P39428 Dnali1-201ENSMUST00000036383 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
Traf1P39428 Gm10614-201ENSMUST00000181414 2538 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC12.85□□□□□ -0.35
Traf1P39428 Gm36940-201ENSMUST00000194281 2036 ntBASIC12.85□□□□□ -0.35
Traf1P39428 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 A230006K03Rik-202ENSMUST00000154958 901 ntTSL 5 BASIC12.85□□□□□ -0.35
Traf1P39428 Gm25343-201ENSMUST00000157460 107 ntBASIC12.85□□□□□ -0.35
Traf1P39428 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Traf1P39428 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Traf1P39428 AC168279.1-201ENSMUST00000214611 382 ntBASIC12.85□□□□□ -0.35
Traf1P39428 AC156568.1-201ENSMUST00000223018 712 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Vmn1r220-201ENSMUST00000072385 897 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Traf1P39428 Gm25517-201ENSMUST00000083865 134 ntBASIC12.85□□□□□ -0.35
Traf1P39428 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC12.85□□□□□ -0.35
Traf1P39428 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Traf1P39428 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Gm44056-201ENSMUST00000204623 1427 ntBASIC12.85□□□□□ -0.35
Traf1P39428 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Traf1P39428 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Traf1P39428 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Gm9244-201ENSMUST00000056767 2129 ntBASIC12.85□□□□□ -0.35
Traf1P39428 Slc10a7-202ENSMUST00000209490 3485 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms