Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Acss3-203ENSMUST00000165067 4696 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Hmgb3O54879 Asb8-204ENSMUST00000143400 2226 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Tcp10a-202ENSMUST00000128533 2589 ntAPPRIS P2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Gimap8-202ENSMUST00000203083 2579 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC9.11□□□□□ -0.95
Hmgb3O54879 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC9.11□□□□□ -0.95
Hmgb3O54879 Gm5070-201ENSMUST00000177599 862 ntBASIC9.11□□□□□ -0.95
Hmgb3O54879 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Gm6450-201ENSMUST00000200896 574 ntBASIC9.11□□□□□ -0.95
Hmgb3O54879 Gm6266-201ENSMUST00000203844 806 ntBASIC9.11□□□□□ -0.95
Hmgb3O54879 Gm2553-201ENSMUST00000215986 605 ntBASIC9.11□□□□□ -0.95
Hmgb3O54879 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC9.11□□□□□ -0.95
Hmgb3O54879 AC126253.1-201ENSMUST00000227974 824 ntBASIC9.11□□□□□ -0.95
Hmgb3O54879 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
Hmgb3O54879 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Git2-203ENSMUST00000112183 4886 ntTSL 5 BASIC9.11□□□□□ -0.95
Hmgb3O54879 Grk1-202ENSMUST00000209909 7431 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Hmgb3O54879 Grk1-201ENSMUST00000033827 7425 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Eya2-201ENSMUST00000063433 2460 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Znrf1-202ENSMUST00000166859 3650 ntTSL 5 BASIC9.11□□□□□ -0.95
Hmgb3O54879 Gm44103-201ENSMUST00000204364 3662 ntBASIC9.11□□□□□ -0.95
Hmgb3O54879 Ccdc15-202ENSMUST00000213633 3331 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
Hmgb3O54879 Tbc1d31-201ENSMUST00000022992 3311 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Trim17-201ENSMUST00000047697 3664 ntTSL 2 BASIC9.11□□□□□ -0.95
Hmgb3O54879 Kdm4a-203ENSMUST00000106403 4536 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Chd9-205ENSMUST00000209423 9419 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Exoc3l4-210ENSMUST00000223050 3418 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Gm10684-201ENSMUST00000098827 2203 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Slfn1-201ENSMUST00000037994 1864 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Mroh2a-202ENSMUST00000113130 7491 ntAPPRIS P2 TSL 5 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Lhx9-201ENSMUST00000019374 4937 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Ubap2-202ENSMUST00000108068 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Grin2a-206ENSMUST00000199708 14634 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Gm38901-201ENSMUST00000202448 3008 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Lasp1-201ENSMUST00000043843 3540 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Gm46355-201ENSMUST00000221434 1671 ntTSL 5 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Hmgb3O54879 C130021I20Rik-201ENSMUST00000147294 3693 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Pik3cb-201ENSMUST00000035037 6478 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Hyal2-206ENSMUST00000195681 2968 ntBASIC9.1□□□□□ -0.95
Hmgb3O54879 Nln-205ENSMUST00000224945 2486 ntBASIC9.1□□□□□ -0.95
Hmgb3O54879 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Ano2-204ENSMUST00000160496 3925 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Sec24d-201ENSMUST00000047923 3903 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Ppp4r1l-ps-202ENSMUST00000132669 2767 ntBASIC9.1□□□□□ -0.95
Hmgb3O54879 Alas1-202ENSMUST00000112524 3089 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Fubp1-201ENSMUST00000106121 4525 ntAPPRIS P2 TSL 2 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Apbb1-217ENSMUST00000191011 2712 ntAPPRIS ALT1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Ncam1-204ENSMUST00000193547 6050 ntAPPRIS P4 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Gm11660-201ENSMUST00000120955 412 ntBASIC9.1□□□□□ -0.95
Hmgb3O54879 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC9.1□□□□□ -0.95
Hmgb3O54879 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC9.1□□□□□ -0.95
Hmgb3O54879 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Gm18539-201ENSMUST00000204745 1090 ntBASIC9.1□□□□□ -0.95
Hmgb3O54879 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 AC160929.1-201ENSMUST00000221247 415 ntBASIC9.1□□□□□ -0.95
Hmgb3O54879 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Akap3-203ENSMUST00000202878 3023 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Il16-203ENSMUST00000145610 3183 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 St3gal6-207ENSMUST00000137035 4123 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Kit-201ENSMUST00000005815 5214 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Srcap-206ENSMUST00000186954 9345 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Lyn-201ENSMUST00000041377 3463 ntAPPRIS ALT1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Dcaf11-206ENSMUST00000128490 2660 ntAPPRIS P2 TSL 2 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Wdfy3-207ENSMUST00000212024 10539 ntTSL 5 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Nudcd3-201ENSMUST00000066496 3927 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Spg20-203ENSMUST00000117341 2957 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Marveld2-201ENSMUST00000022137 3061 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Ryr1-208ENSMUST00000214374 15300 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Arpp21-217ENSMUST00000161412 1687 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Gm10827-201ENSMUST00000181897 2586 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Traip-201ENSMUST00000049348 2706 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 N6amt1-204ENSMUST00000120284 3473 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hmgb3O54879 Srcap-207ENSMUST00000187040 10654 ntAPPRIS P2 TSL 5 BASIC9.1□□□□□ -0.95
Hmgb3O54879 Dglucy-201ENSMUST00000069782 3295 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hmgb3O54879 Gm26672-201ENSMUST00000180922 2685 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms