Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Gm45124-201ENSMUST00000206723 2755 ntBASIC12.98□□□□□ -0.33
Scn11aQ9R053 Gm7861-201ENSMUST00000110749 506 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Gm7849-201ENSMUST00000110752 488 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Sfi1-204ENSMUST00000118627 831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Fthl17-ps2-201ENSMUST00000122268 528 ntBASIC12.98□□□□□ -0.33
Scn11aQ9R053 Gm15540-201ENSMUST00000136052 674 ntTSL 2 BASIC12.98□□□□□ -0.33
Scn11aQ9R053 2810433D01Rik-202ENSMUST00000154798 1045 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Zcwpw2-203ENSMUST00000187803 372 ntBASIC12.98□□□□□ -0.33
Scn11aQ9R053 Gm3635-201ENSMUST00000212314 354 ntBASIC12.98□□□□□ -0.33
Scn11aQ9R053 CT025618.1-201ENSMUST00000227409 1279 ntBASIC12.98□□□□□ -0.33
Scn11aQ9R053 1700047G03Rik-205ENSMUST00000227822 1048 ntBASIC12.98□□□□□ -0.33
Scn11aQ9R053 Rpl9-201ENSMUST00000057885 738 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Lgals8-201ENSMUST00000099820 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Babam2-204ENSMUST00000114515 1497 ntTSL 5 BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 9530026P05Rik-204ENSMUST00000204449 1740 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Scn11aQ9R053 Bco1-203ENSMUST00000176860 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Smarca5-ps-201ENSMUST00000121843 3123 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 9130227L01Rik-202ENSMUST00000189293 1906 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm22495-201ENSMUST00000104492 126 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm15636-201ENSMUST00000119205 668 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm13857-201ENSMUST00000139645 173 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gzmn-201ENSMUST00000015587 956 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Mir8111-201ENSMUST00000184463 137 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 1500015A07Rik-202ENSMUST00000184530 423 ntTSL 3 BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm3527-201ENSMUST00000198905 460 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 6720482G16Rik-201ENSMUST00000199552 1192 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm9515-201ENSMUST00000200276 647 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm45090-201ENSMUST00000208775 1148 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm9619-201ENSMUST00000211587 762 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Mir341-201ENSMUST00000093593 96 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Atf7-201ENSMUST00000096143 390 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gemin8-203ENSMUST00000096252 1039 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Pole-202ENSMUST00000112481 1523 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm2128-201ENSMUST00000108009 2560 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm29245-201ENSMUST00000187332 1416 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Slc17a8-202ENSMUST00000105295 1863 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 AC160060.1-201ENSMUST00000217840 1813 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm42521-201ENSMUST00000199190 2040 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Ighv1-56-201ENSMUST00000103527 294 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Scn11aQ9R053 3110039M20Rik-201ENSMUST00000127041 868 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm4778-202ENSMUST00000159517 1241 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm6686-201ENSMUST00000178455 258 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Rps14-201ENSMUST00000025511 683 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm25125-201ENSMUST00000083340 136 ntBASIC12.97□□□□□ -0.33
Scn11aQ9R053 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Scn11aQ9R053 Gm29101-201ENSMUST00000188329 1471 ntBASIC12.96□□□□□ -0.33
Scn11aQ9R053 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 Fam78b-202ENSMUST00000126198 2951 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 Gm5697-201ENSMUST00000122295 2482 ntBASIC12.96□□□□□ -0.33
Scn11aQ9R053 Gm43963-201ENSMUST00000203466 2488 ntBASIC12.96□□□□□ -0.33
Scn11aQ9R053 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Scn11aQ9R053 Mymk-201ENSMUST00000009358 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 Rubie-203ENSMUST00000227803 2430 ntBASIC12.96□□□□□ -0.33
Scn11aQ9R053 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 F730016J06Rik-201ENSMUST00000126140 1344 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 Ms4a7-203ENSMUST00000067532 1334 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Scn11aQ9R053 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Scn11aQ9R053 Igll1-201ENSMUST00000100136 870 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
Scn11aQ9R053 Gm5510-201ENSMUST00000117826 486 ntBASIC12.96□□□□□ -0.34
Scn11aQ9R053 Gm12688-201ENSMUST00000136525 701 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Scn11aQ9R053 Gm12916-201ENSMUST00000139012 948 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Scn11aQ9R053 Gm26313-201ENSMUST00000157770 308 ntBASIC12.96□□□□□ -0.34
Scn11aQ9R053 Gm16587-201ENSMUST00000161943 863 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Scn11aQ9R053 Gm16228-201ENSMUST00000162286 809 ntBASIC12.96□□□□□ -0.34
Scn11aQ9R053 Gm17231-201ENSMUST00000163186 645 ntTSL 3 BASIC12.96□□□□□ -0.34
Scn11aQ9R053 Tstd1-201ENSMUST00000171362 551 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 92.4 ms