Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 AC172027.1-201ENSMUST00000217659 337 ntBASIC11.77□□□□□ -0.53
Clp1Q99LI9 Isca2-206ENSMUST00000222449 374 ntTSL 2 BASIC11.77□□□□□ -0.53
Clp1Q99LI9 4930553M12Rik-201ENSMUST00000057837 498 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Tex33-201ENSMUST00000074380 1147 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Tex45-201ENSMUST00000047265 1613 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Nek3-204ENSMUST00000178324 1989 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Ccr6-205ENSMUST00000177568 1334 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Gm19027-201ENSMUST00000187291 1355 ntBASIC11.77□□□□□ -0.53
Clp1Q99LI9 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Gm42858-201ENSMUST00000202512 1704 ntBASIC11.77□□□□□ -0.53
Clp1Q99LI9 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Gm13135-201ENSMUST00000117628 3121 ntBASIC11.77□□□□□ -0.53
Clp1Q99LI9 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Dnali1-201ENSMUST00000036383 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
Clp1Q99LI9 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Ptprm-203ENSMUST00000224091 3773 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Dedd-202ENSMUST00000097467 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gm5159-201ENSMUST00000212733 1652 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Trbv31-201ENSMUST00000103300 334 ntAPPRIS ALT2 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 2610203C22Rik-201ENSMUST00000115480 1246 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gm6441-201ENSMUST00000120983 696 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 Mir1893-201ENSMUST00000122565 83 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gm16158-201ENSMUST00000123509 785 ntTSL 5 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gm4943-201ENSMUST00000132879 424 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 9030204H09Rik-201ENSMUST00000139455 653 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gm16305-201ENSMUST00000140747 556 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 4930524O07Rik-202ENSMUST00000162334 293 ntTSL 2 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Tstd1-201ENSMUST00000171362 551 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Map1lc3b-205ENSMUST00000181948 766 ntTSL 2 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gm21139-201ENSMUST00000186594 877 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 Zcwpw2-203ENSMUST00000187803 372 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gm2345-201ENSMUST00000193451 589 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gm37257-201ENSMUST00000194871 717 ntTSL 5 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gm45481-201ENSMUST00000209717 877 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gm9644-201ENSMUST00000212828 1183 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gm7183-201ENSMUST00000213870 1005 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 AC134913.2-201ENSMUST00000225017 771 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 AC129217.1-201ENSMUST00000225181 642 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 CT030195.2-201ENSMUST00000226074 1286 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Defb29-201ENSMUST00000060598 462 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Poc1a-209ENSMUST00000216228 1431 ntTSL 5 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Gm43972-201ENSMUST00000181398 1467 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 AC159810.1-201ENSMUST00000214838 1480 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Cyp2d41-ps-201ENSMUST00000180453 1503 ntBASIC11.76□□□□□ -0.53
Clp1Q99LI9 Aldoa-202ENSMUST00000087566 1549 ntTSL 5 BASIC11.76□□□□□ -0.53
Clp1Q99LI9 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 4930555A03Rik-201ENSMUST00000196052 1556 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 AC122881.1-201ENSMUST00000225757 2695 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 AC156031.2-201ENSMUST00000213107 3310 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 67.3 ms