Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Gm26448-201ENSMUST00000082446 203 ntBASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Scn8a-201ENSMUST00000082209 11293 ntAPPRIS ALT1 TSL 5 BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Sipa1l3-215ENSMUST00000183096 7713 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Sipa1l3-201ENSMUST00000085809 7713 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Sqor-202ENSMUST00000110506 1985 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Col6a3-202ENSMUST00000097653 9001 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Lig4-201ENSMUST00000095476 5028 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Dcaf11-206ENSMUST00000128490 2660 ntAPPRIS P2 TSL 2 BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Pard3-213ENSMUST00000160766 4949 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Hnrnpk-216ENSMUST00000177019 2626 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Suclg2-204ENSMUST00000204224 3367 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Aspm-201ENSMUST00000053364 9867 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 4632411P08Rik-201ENSMUST00000181005 3237 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Pcdhgb8-201ENSMUST00000195764 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Gcsam-202ENSMUST00000161347 1796 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Susd2-202ENSMUST00000095541 3151 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Ehmt1-205ENSMUST00000114432 4539 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Faim2-201ENSMUST00000023750 4520 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Ndrg4-201ENSMUST00000041318 3101 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 CT033774.1-201ENSMUST00000223084 2394 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Tfap2b-204ENSMUST00000187754 3023 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 C530044C16Rik-201ENSMUST00000204275 1624 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Ccdc28bQ8CEG5 Gabra5-203ENSMUST00000206734 2224 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Platr9-202ENSMUST00000149572 1556 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Atg9a-205ENSMUST00000188347 4041 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Zfp956-201ENSMUST00000101445 2761 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gramd1b-202ENSMUST00000118159 2781 ntTSL 5 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Agbl2-201ENSMUST00000037206 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Pnpla3-201ENSMUST00000045289 4640 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gm16982-201ENSMUST00000181275 2620 ntTSL 2 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Ttc1-201ENSMUST00000048578 1438 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Eef2-201ENSMUST00000047864 3089 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Nit1-201ENSMUST00000111289 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Cd1d1-201ENSMUST00000029717 1946 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Kcnab2-207ENSMUST00000160884 3922 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Brat1-203ENSMUST00000110806 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 AA474408-201ENSMUST00000098110 3339 ntBASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gm27501-201ENSMUST00000183599 107 ntBASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gm28686-201ENSMUST00000187404 609 ntBASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gm5714-201ENSMUST00000197343 566 ntBASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gm9368-201ENSMUST00000219348 831 ntBASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gm18615-201ENSMUST00000222919 1031 ntBASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 AC124732.3-201ENSMUST00000221835 1765 ntBASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Sept2-201ENSMUST00000027495 3779 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Dctn1-202ENSMUST00000113907 4205 ntTSL 5 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Abl2-202ENSMUST00000166172 10151 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gm26862-201ENSMUST00000181886 2191 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gm26574-201ENSMUST00000181876 2141 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Hhip-201ENSMUST00000079038 9074 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Col11a1-201ENSMUST00000092155 7667 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gm32511-202ENSMUST00000217021 2069 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gm45699-201ENSMUST00000212838 1576 ntTSL 2 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Nudt13-207ENSMUST00000224311 1574 ntBASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Gpr155-204ENSMUST00000112044 4201 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Sap30bpos-201ENSMUST00000132264 2352 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Tro-201ENSMUST00000087253 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Ccdc28bQ8CEG5 Ncoa2-201ENSMUST00000006037 4897 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Gm43908-201ENSMUST00000205074 1472 ntBASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Arhgef2-231ENSMUST00000177498 3966 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 AC117656.2-201ENSMUST00000224931 2215 ntBASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Decr1-201ENSMUST00000029877 2959 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Efcab12-201ENSMUST00000032468 2551 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Ly9-203ENSMUST00000111277 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Gm38054-201ENSMUST00000192380 2167 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Sept9-204ENSMUST00000106349 2932 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 AC115891.3-201ENSMUST00000219161 2472 ntBASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Mdm4-206ENSMUST00000186617 4694 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Zfp330-201ENSMUST00000034147 1675 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 AI606181-201ENSMUST00000099454 2796 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Zfp959-201ENSMUST00000054780 2028 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Mup-ps29-201ENSMUST00000122281 202 ntBASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Ccdc28bQ8CEG5 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 196.3 ms