Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Kcnn3-201ENSMUST00000000811 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Mcf2l-202ENSMUST00000098927 3215 ntTSL 5 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Synpo2l-201ENSMUST00000057090 4394 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Slc1a2-201ENSMUST00000005220 2127 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Immt-206ENSMUST00000166975 2469 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Habp2-201ENSMUST00000078284 2314 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Apba2-201ENSMUST00000032732 3321 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Gpcpd1-202ENSMUST00000060955 3686 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Trim65-202ENSMUST00000106440 4040 ntTSL 5 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Ppp1r10-201ENSMUST00000087210 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 AC149588.2-201ENSMUST00000228182 1859 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 AC164092.1-201ENSMUST00000215635 2232 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 AC158355.1-201ENSMUST00000215895 1705 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Acin1-203ENSMUST00000111484 4048 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm16397-201ENSMUST00000122201 494 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm7666-201ENSMUST00000146631 819 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 B430010I23Rik-202ENSMUST00000152188 1168 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm28937-201ENSMUST00000185413 695 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm29400-201ENSMUST00000187208 695 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm28662-201ENSMUST00000188446 695 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm28251-201ENSMUST00000188835 695 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm37318-201ENSMUST00000194325 695 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm38017-201ENSMUST00000194768 695 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm37287-201ENSMUST00000195449 695 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm37793-201ENSMUST00000195548 695 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm43058-201ENSMUST00000197645 625 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 AC125070.1-201ENSMUST00000223523 555 ntTSL 5 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm5537-201ENSMUST00000091117 1252 ntBASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Gm10271-201ENSMUST00000092165 156 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Lpo-201ENSMUST00000103177 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Cars-202ENSMUST00000105909 2462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sh3rf1Q69ZI1 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 1810053B23Rik-205ENSMUST00000188056 1592 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Arhgap15os-201ENSMUST00000139948 1761 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Mlc1-202ENSMUST00000109368 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Mthfd1l-203ENSMUST00000120585 3687 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gdi1-201ENSMUST00000015435 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm8752-201ENSMUST00000173427 1694 ntBASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm11569-201ENSMUST00000105057 869 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm13916-201ENSMUST00000117368 628 ntBASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm14314-201ENSMUST00000118225 1015 ntBASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm11500-201ENSMUST00000118237 601 ntBASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm15725-201ENSMUST00000119947 1090 ntBASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm14585-201ENSMUST00000120713 634 ntBASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm6485-201ENSMUST00000160676 439 ntBASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm8815-201ENSMUST00000173809 620 ntBASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm23771-201ENSMUST00000178702 110 ntBASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Mir6958-201ENSMUST00000184207 73 ntBASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Il10ra-202ENSMUST00000176222 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sh3rf1Q69ZI1 Syncrip-208ENSMUST00000174282 3404 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms