Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gzmn-201ENSMUST00000015587 956 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cux1P53564 Gm20703-201ENSMUST00000175668 385 ntTSL 2 BASIC16.81■□□□□ 0.28
Cux1P53564 Gm43866-201ENSMUST00000203894 839 ntBASIC16.81■□□□□ 0.28
Cux1P53564 Tmem238l-203ENSMUST00000211300 930 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
Cux1P53564 Rps2-ps12-201ENSMUST00000214262 785 ntBASIC16.81■□□□□ 0.28
Cux1P53564 2310039L15Rik-203ENSMUST00000220058 727 ntTSL 5 BASIC16.81■□□□□ 0.28
Cux1P53564 Tex30-201ENSMUST00000027215 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cux1P53564 Gm8618-201ENSMUST00000097570 432 ntBASIC16.81■□□□□ 0.28
Cux1P53564 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cux1P53564 Atf3-203ENSMUST00000195117 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cux1P53564 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cux1P53564 Amd-ps3-201ENSMUST00000072796 1496 ntBASIC16.81■□□□□ 0.28
Cux1P53564 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cux1P53564 Gm10537-201ENSMUST00000192625 1698 ntBASIC16.81■□□□□ 0.28
Cux1P53564 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cux1P53564 Gm2238-201ENSMUST00000192074 3669 ntBASIC16.81■□□□□ 0.28
Cux1P53564 AC117194.1-201ENSMUST00000224847 3002 ntBASIC16.81■□□□□ 0.28
Cux1P53564 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
Cux1P53564 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cux1P53564 Ccdc32-203ENSMUST00000110834 828 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Gm13393-201ENSMUST00000141935 396 ntTSL 5 BASIC16.8■□□□□ 0.28
Cux1P53564 Gm16228-201ENSMUST00000162286 809 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Gm25591-201ENSMUST00000177317 94 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Scgb2b27-203ENSMUST00000185399 702 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
Cux1P53564 Gm29200-201ENSMUST00000188118 1085 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Gm6439-201ENSMUST00000199849 862 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Gm43997-201ENSMUST00000203986 1005 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Gm18539-201ENSMUST00000204745 1090 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Eif3k-204ENSMUST00000208616 909 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Gm44917-201ENSMUST00000208798 520 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Thy1-205ENSMUST00000215156 460 ntTSL 5 BASIC16.8■□□□□ 0.28
Cux1P53564 Tmod3-205ENSMUST00000215821 898 ntTSL 3 BASIC16.8■□□□□ 0.28
Cux1P53564 Magoh-201ENSMUST00000030348 692 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Olfr1394-201ENSMUST00000052668 939 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Cux1P53564 Tmem208-202ENSMUST00000098453 950 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Sec24d-201ENSMUST00000047923 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Als2cr12-206ENSMUST00000191565 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Gm19178-201ENSMUST00000217524 1819 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Atp5s-204ENSMUST00000220916 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC16.8■□□□□ 0.28
Cux1P53564 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Cux1P53564 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Gm13192-201ENSMUST00000101199 208 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Ccdc42-202ENSMUST00000102612 785 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Gm10443-201ENSMUST00000119024 210 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Gm16235-202ENSMUST00000149562 206 ntTSL 3 BASIC16.8■□□□□ 0.28
Cux1P53564 Gm4775-201ENSMUST00000169588 402 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Gm37885-202ENSMUST00000195868 685 ntTSL 3 BASIC16.8■□□□□ 0.28
Cux1P53564 Gm20568-201ENSMUST00000197129 208 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Olfr642-201ENSMUST00000052660 945 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Cux1P53564 2010001K21Rik-201ENSMUST00000060680 519 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Gm4778-201ENSMUST00000098878 1098 ntBASIC16.8■□□□□ 0.28
Cux1P53564 Prnd-201ENSMUST00000110169 1918 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cux1P53564 Gm6768-201ENSMUST00000022467 1878 ntBASIC16.79■□□□□ 0.28
Cux1P53564 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Cux1P53564 Gm43984-201ENSMUST00000204572 2864 ntBASIC16.79■□□□□ 0.28
Cux1P53564 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 AC124561.1-202ENSMUST00000228652 1929 ntBASIC16.79■□□□□ 0.28
Cux1P53564 AC126257.2-201ENSMUST00000215507 2300 ntBASIC16.79■□□□□ 0.28
Cux1P53564 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Cux1P53564 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Cux1P53564 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
Cux1P53564 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
Cux1P53564 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Tcl1b4-202ENSMUST00000222867 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Trav13-2-201ENSMUST00000103658 390 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Cux1P53564 Gm14004-201ENSMUST00000138875 590 ntTSL 2 BASIC16.79■□□□□ 0.28
Cux1P53564 Gm12744-201ENSMUST00000146976 519 ntTSL 3 BASIC16.79■□□□□ 0.28
Cux1P53564 Gm17107-201ENSMUST00000170983 553 ntBASIC16.79■□□□□ 0.28
Cux1P53564 Gm26626-201ENSMUST00000180989 713 ntTSL 2 BASIC16.79■□□□□ 0.28
Cux1P53564 Gm29669-201ENSMUST00000188605 881 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Gm42493-201ENSMUST00000197559 1121 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Gm42208-201ENSMUST00000198215 670 ntTSL 3 BASIC16.79■□□□□ 0.28
Cux1P53564 Gm45783-201ENSMUST00000210877 656 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
Cux1P53564 Tex46-201ENSMUST00000046647 683 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Fam186a-201ENSMUST00000062631 759 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cux1P53564 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 72.4 ms