Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 AC141884.2-201ENSMUST00000228811 775 ntBASIC12.88□□□□□ -0.35
Col1a1P11087 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Col1a1P11087 Ankrd45-201ENSMUST00000052245 849 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
Col1a1P11087 Fam186a-201ENSMUST00000062631 759 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Col1a1P11087 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Col1a1P11087 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Col1a1P11087 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Col1a1P11087 Kcnma1-207ENSMUST00000172099 3354 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Col1a1P11087 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC12.88□□□□□ -0.35
Col1a1P11087 Prph2-201ENSMUST00000024773 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 Snora68-201ENSMUST00000104375 131 ntBASIC12.87□□□□□ -0.35
Col1a1P11087 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
Col1a1P11087 4930412O13Rik-202ENSMUST00000114919 558 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
Col1a1P11087 Rab11a-204ENSMUST00000167569 726 ntTSL 3 BASIC12.87□□□□□ -0.35
Col1a1P11087 Gm20091-201ENSMUST00000179683 189 ntBASIC12.87□□□□□ -0.35
Col1a1P11087 Gm8707-201ENSMUST00000183325 980 ntBASIC12.87□□□□□ -0.35
Col1a1P11087 Trav18-202ENSMUST00000186573 325 ntAPPRIS ALT2 BASIC12.87□□□□□ -0.35
Col1a1P11087 Gm7255-201ENSMUST00000187371 908 ntBASIC12.87□□□□□ -0.35
Col1a1P11087 Gm8525-201ENSMUST00000189674 861 ntBASIC12.87□□□□□ -0.35
Col1a1P11087 Mylpf-206ENSMUST00000206772 653 ntTSL 3 BASIC12.87□□□□□ -0.35
Col1a1P11087 Gm44908-201ENSMUST00000208610 266 ntBASIC12.87□□□□□ -0.35
Col1a1P11087 Fut1-202ENSMUST00000209379 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 AC132384.2-201ENSMUST00000218018 526 ntBASIC12.87□□□□□ -0.35
Col1a1P11087 AC134860.2-201ENSMUST00000225277 1036 ntBASIC12.87□□□□□ -0.35
Col1a1P11087 AC164883.7-201ENSMUST00000228534 851 ntBASIC12.87□□□□□ -0.35
Col1a1P11087 Pgk1-rs7-201ENSMUST00000085735 1255 ntBASIC12.87□□□□□ -0.35
Col1a1P11087 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Col1a1P11087 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Col1a1P11087 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Col1a1P11087 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC12.87□□□□□ -0.35
Col1a1P11087 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 Arhgef3-204ENSMUST00000225949 3198 ntBASIC12.87□□□□□ -0.35
Col1a1P11087 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC12.87□□□□□ -0.35
Col1a1P11087 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 Tcl1b4-202ENSMUST00000222867 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Col1a1P11087 Atp6v0e2-201ENSMUST00000040361 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col1a1P11087 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC12.86□□□□□ -0.35
Col1a1P11087 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC12.86□□□□□ -0.35
Col1a1P11087 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC12.86□□□□□ -0.35
Col1a1P11087 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 AC160060.1-201ENSMUST00000217840 1813 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
Col1a1P11087 Gm26626-201ENSMUST00000180989 713 ntTSL 2 BASIC12.86□□□□□ -0.35
Col1a1P11087 Gm5190-201ENSMUST00000192434 357 ntBASIC12.86□□□□□ -0.35
Col1a1P11087 Gm6370-202ENSMUST00000198912 1017 ntAPPRIS ALT2 TSL 3 BASIC12.86□□□□□ -0.35
Col1a1P11087 Gm44388-201ENSMUST00000204350 258 ntBASIC12.86□□□□□ -0.35
Col1a1P11087 Eif3k-204ENSMUST00000208616 909 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 AC140381.2-201ENSMUST00000217935 1260 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 AC124356.1-201ENSMUST00000221469 698 ntBASIC12.86□□□□□ -0.35
Col1a1P11087 CU025215.1-201ENSMUST00000222986 603 ntBASIC12.86□□□□□ -0.35
Col1a1P11087 Olfr642-201ENSMUST00000052660 945 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Col1a1P11087 Gm10701-201ENSMUST00000098926 906 ntTSL 2 BASIC12.86□□□□□ -0.35
Col1a1P11087 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC12.86□□□□□ -0.35
Col1a1P11087 Adck1-201ENSMUST00000101165 2158 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Col1a1P11087 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Col1a1P11087 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Col1a1P11087 Gfra2-203ENSMUST00000227697 1323 ntBASIC12.86□□□□□ -0.35
Col1a1P11087 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 1110051M20Rik-202ENSMUST00000094835 1498 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Galntl5-201ENSMUST00000030778 1627 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Col1a1P11087 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC12.86□□□□□ -0.35
Col1a1P11087 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Col1a1P11087 Trim34b-202ENSMUST00000180136 1535 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Col1a1P11087 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col1a1P11087 Gm38312-201ENSMUST00000195426 1746 ntBASIC12.85□□□□□ -0.35
Col1a1P11087 Bnc2-202ENSMUST00000107198 3948 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Col1a1P11087 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC12.85□□□□□ -0.35
Col1a1P11087 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col1a1P11087 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col1a1P11087 Gm12463-201ENSMUST00000118271 849 ntBASIC12.85□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms