Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Col1a1P11087 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Scnn1g-201ENSMUST00000000221 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Tnnt3-213ENSMUST00000105952 1040 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Tnnt3-215ENSMUST00000105954 1052 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Tnnt3-216ENSMUST00000105955 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Tnnt3-218ENSMUST00000105958 1050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Pxmp4-202ENSMUST00000109703 560 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 1700064H15Rik-201ENSMUST00000119133 394 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Gm22388-201ENSMUST00000158194 248 ntBASIC12.9□□□□□ -0.34
Col1a1P11087 Tnnt3-225ENSMUST00000179658 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Gm16894-201ENSMUST00000181756 842 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Gm29595-202ENSMUST00000187954 466 ntTSL 3 BASIC12.9□□□□□ -0.34
Col1a1P11087 4930444A19Rik-202ENSMUST00000190007 633 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Gm36307-201ENSMUST00000195831 953 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 4930509H03Rik-201ENSMUST00000196088 1215 ntBASIC12.9□□□□□ -0.34
Col1a1P11087 Gm9619-201ENSMUST00000211587 762 ntBASIC12.9□□□□□ -0.34
Col1a1P11087 Fibp-205ENSMUST00000225141 1209 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Col1a1P11087 Fthl17a-201ENSMUST00000048382 835 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Tnnt3-202ENSMUST00000078497 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Krtap3-2-201ENSMUST00000092699 1031 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Col1a1P11087 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC12.9□□□□□ -0.34
Col1a1P11087 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC12.9□□□□□ -0.34
Col1a1P11087 Fcgr2b-204ENSMUST00000159969 1578 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Smok2b-201ENSMUST00000059824 1584 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Col1a1P11087 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Rasgrp1-204ENSMUST00000173252 1750 ntTSL 5 BASIC12.9□□□□□ -0.34
Col1a1P11087 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Gm45124-201ENSMUST00000206723 2755 ntBASIC12.9□□□□□ -0.35
Col1a1P11087 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.35
Col1a1P11087 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Zw10-201ENSMUST00000034803 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Mcemp1-201ENSMUST00000014118 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Trav13-2-201ENSMUST00000103658 390 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Col1a1P11087 Nptn-202ENSMUST00000114121 863 ntTSL 5 BASIC12.89□□□□□ -0.35
Col1a1P11087 Gm13777-201ENSMUST00000118208 345 ntBASIC12.89□□□□□ -0.35
Col1a1P11087 Rpl10a-ps1-201ENSMUST00000120360 654 ntBASIC12.89□□□□□ -0.35
Col1a1P11087 1700095J12Rik-201ENSMUST00000124620 737 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Pla2g1b-204ENSMUST00000145785 419 ntTSL 5 BASIC12.89□□□□□ -0.35
Col1a1P11087 Gm37988-201ENSMUST00000155020 825 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Col1a1P11087 Mok-204ENSMUST00000177224 551 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Mipep-ps-201ENSMUST00000177439 291 ntBASIC12.89□□□□□ -0.35
Col1a1P11087 Gal3st2b-201ENSMUST00000177958 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Gm31786-201ENSMUST00000212305 564 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Gm35239-201ENSMUST00000218346 487 ntTSL 3 BASIC12.89□□□□□ -0.35
Col1a1P11087 AC155300.1-201ENSMUST00000219134 480 ntBASIC12.89□□□□□ -0.35
Col1a1P11087 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC12.89□□□□□ -0.35
Col1a1P11087 Gemin8-203ENSMUST00000096252 1039 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col1a1P11087 Hrc-201ENSMUST00000085351 2411 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Col1a1P11087 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC12.88□□□□□ -0.35
Col1a1P11087 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Ppil2-202ENSMUST00000115719 838 ntTSL 2 BASIC12.88□□□□□ -0.35
Col1a1P11087 Gm12435-201ENSMUST00000118949 1016 ntBASIC12.88□□□□□ -0.35
Col1a1P11087 Gm12224-201ENSMUST00000124047 567 ntTSL 2 BASIC12.88□□□□□ -0.35
Col1a1P11087 Gm12688-201ENSMUST00000136525 701 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Gm12916-201ENSMUST00000139012 948 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Stamos-201ENSMUST00000152524 801 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Ube4bos3-201ENSMUST00000155845 756 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col1a1P11087 Gm16227-201ENSMUST00000160088 563 ntTSL 3 BASIC12.88□□□□□ -0.35
Col1a1P11087 Gm20694-201ENSMUST00000176943 404 ntBASIC12.88□□□□□ -0.35
Col1a1P11087 Gm25591-201ENSMUST00000177317 94 ntBASIC12.88□□□□□ -0.35
Col1a1P11087 Gm4960-201ENSMUST00000182928 1001 ntBASIC12.88□□□□□ -0.35
Col1a1P11087 Kif4-ps-202ENSMUST00000185083 652 ntBASIC12.88□□□□□ -0.35
Col1a1P11087 Gm44917-201ENSMUST00000208798 520 ntBASIC12.88□□□□□ -0.35
Col1a1P11087 Gm45875-201ENSMUST00000212178 781 ntTSL 3 BASIC12.88□□□□□ -0.35
Col1a1P11087 Gm8796-201ENSMUST00000219122 936 ntBASIC12.88□□□□□ -0.35
Col1a1P11087 Gm46349-201ENSMUST00000219678 917 ntTSL 5 BASIC12.88□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms