Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Gm2238-201ENSMUST00000192074 3669 ntBASIC13.03□□□□□ -0.32
Scn11aQ9R053 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Gm11473-201ENSMUST00000118980 359 ntBASIC13.02□□□□□ -0.32
Scn11aQ9R053 Prelid3b-203ENSMUST00000120822 622 ntTSL 3 BASIC13.02□□□□□ -0.32
Scn11aQ9R053 Fbxo16-201ENSMUST00000169656 1019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Scn11aQ9R053 Gm5808-201ENSMUST00000178090 357 ntBASIC13.02□□□□□ -0.32
Scn11aQ9R053 Map1lc3b-205ENSMUST00000181948 766 ntTSL 2 BASIC13.02□□□□□ -0.32
Scn11aQ9R053 Gm5801-201ENSMUST00000182247 780 ntBASIC13.02□□□□□ -0.32
Scn11aQ9R053 AC124613.1-201ENSMUST00000198711 88 ntBASIC13.02□□□□□ -0.32
Scn11aQ9R053 1810059H22Rik-207ENSMUST00000204809 289 ntTSL 3 BASIC13.02□□□□□ -0.32
Scn11aQ9R053 AC155709.2-201ENSMUST00000219360 678 ntTSL 3 BASIC13.02□□□□□ -0.32
Scn11aQ9R053 AC103672.1-201ENSMUST00000227502 365 ntBASIC13.02□□□□□ -0.32
Scn11aQ9R053 AC161172.1-201ENSMUST00000227801 486 ntBASIC13.02□□□□□ -0.32
Scn11aQ9R053 Atp6v1e2-201ENSMUST00000065758 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Scn11aQ9R053 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Scn11aQ9R053 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Scn11aQ9R053 Stau2-202ENSMUST00000054668 2907 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Scn11aQ9R053 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Scn11aQ9R053 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Scn11aQ9R053 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Scn11aQ9R053 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Scn11aQ9R053 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 4930432L08Rik-201ENSMUST00000132154 1608 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Nr1h4-203ENSMUST00000105297 2013 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Pxmp4-202ENSMUST00000109703 560 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Gm6238-201ENSMUST00000120999 465 ntBASIC13.02□□□□□ -0.33
Scn11aQ9R053 Spata3-205ENSMUST00000130504 1100 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Gm4943-201ENSMUST00000132879 424 ntBASIC13.02□□□□□ -0.33
Scn11aQ9R053 Gm5860-201ENSMUST00000137810 1028 ntTSL 2 BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Gal3st2b-201ENSMUST00000177958 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Gm26901-202ENSMUST00000193106 256 ntTSL 3 BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Gm43244-201ENSMUST00000196994 1285 ntBASIC13.02□□□□□ -0.33
Scn11aQ9R053 Gm43106-201ENSMUST00000199485 637 ntBASIC13.02□□□□□ -0.33
Scn11aQ9R053 Chac2-201ENSMUST00000020553 1018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Gm8268-201ENSMUST00000209683 458 ntBASIC13.02□□□□□ -0.33
Scn11aQ9R053 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Npy1r-201ENSMUST00000039303 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
Scn11aQ9R053 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Gpr19-213ENSMUST00000215088 1484 ntTSL 5 BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Gm5159-201ENSMUST00000212733 1652 ntBASIC13.01□□□□□ -0.33
Scn11aQ9R053 4931423N10Rik-201ENSMUST00000028113 1842 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Snhg3-202ENSMUST00000141090 581 ntTSL 2 BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Kif4-ps-202ENSMUST00000185083 652 ntBASIC13.01□□□□□ -0.33
Scn11aQ9R053 Gm29543-201ENSMUST00000188138 967 ntBASIC13.01□□□□□ -0.33
Scn11aQ9R053 1700084F23Rik-202ENSMUST00000188461 747 ntTSL 3 BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Ghrl-204ENSMUST00000203770 891 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Ghrl-205ENSMUST00000204163 447 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 2310039L15Rik-203ENSMUST00000220058 727 ntTSL 5 BASIC13.01□□□□□ -0.33
Scn11aQ9R053 AC101205.2-201ENSMUST00000226206 715 ntBASIC13.01□□□□□ -0.33
Scn11aQ9R053 Fam3b-201ENSMUST00000049721 853 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Slc10a1-201ENSMUST00000095572 1674 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Cep70-207ENSMUST00000190715 1768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Micu1-212ENSMUST00000179709 1814 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Ccin-201ENSMUST00000095107 1941 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 BC052040-201ENSMUST00000110918 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Myadm-202ENSMUST00000164553 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Scn11aQ9R053 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC13□□□□□ -0.33
Scn11aQ9R053 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 Dcst2-201ENSMUST00000208216 2285 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Scn11aQ9R053 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Scn11aQ9R053 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC13□□□□□ -0.33
Scn11aQ9R053 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Scn11aQ9R053 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 61.8 ms