Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Dmrtc1b-201ENSMUST00000101324 1200 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Mir671-201ENSMUST00000102432 98 ntBASIC14.37□□□□□ -0.11
Trim28Q62318 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Dmrtc1b-202ENSMUST00000113609 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Gm15031-201ENSMUST00000121341 210 ntBASIC14.37□□□□□ -0.11
Trim28Q62318 Gm9507-202ENSMUST00000180157 654 ntBASIC14.37□□□□□ -0.11
Trim28Q62318 Gm38313-201ENSMUST00000191953 1266 ntBASIC14.37□□□□□ -0.11
Trim28Q62318 Cdk5-203ENSMUST00000198990 783 ntTSL 5 BASIC14.37□□□□□ -0.11
Trim28Q62318 AC154407.1-201ENSMUST00000226777 526 ntBASIC14.37□□□□□ -0.11
Trim28Q62318 Cstb-201ENSMUST00000005185 603 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC14.37□□□□□ -0.11
Trim28Q62318 Snx27-208ENSMUST00000200642 1308 ntTSL 5 BASIC14.37□□□□□ -0.11
Trim28Q62318 Gm5434-202ENSMUST00000222384 1451 ntBASIC14.37□□□□□ -0.11
Trim28Q62318 Gm5434-201ENSMUST00000071825 1451 ntBASIC14.37□□□□□ -0.11
Trim28Q62318 Snx29-201ENSMUST00000096273 1622 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Bcl2-202ENSMUST00000189999 2841 ntBASIC14.37□□□□□ -0.11
Trim28Q62318 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Trim28Q62318 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Trim28Q62318 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Fcgr2b-204ENSMUST00000159969 1578 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Ccdc162-212ENSMUST00000219054 3182 ntTSL 5 BASIC14.36□□□□□ -0.11
Trim28Q62318 Tspan32os-201ENSMUST00000131740 975 ntTSL 2 BASIC14.36□□□□□ -0.11
Trim28Q62318 Gm25226-201ENSMUST00000158198 123 ntBASIC14.36□□□□□ -0.11
Trim28Q62318 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Gm16894-201ENSMUST00000181756 842 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Gm5621-201ENSMUST00000187303 640 ntBASIC14.36□□□□□ -0.11
Trim28Q62318 Gm45680-201ENSMUST00000211135 214 ntTSL 3 BASIC14.36□□□□□ -0.11
Trim28Q62318 AC126799.1-201ENSMUST00000221976 246 ntBASIC14.36□□□□□ -0.11
Trim28Q62318 Cenpx-201ENSMUST00000026137 692 ntTSL 2 BASIC14.36□□□□□ -0.11
Trim28Q62318 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Trim28Q62318 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC14.36□□□□□ -0.11
Trim28Q62318 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Gm2128-201ENSMUST00000108009 2560 ntBASIC14.36□□□□□ -0.11
Trim28Q62318 Etfrf1-201ENSMUST00000039729 2436 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC14.36□□□□□ -0.11
Trim28Q62318 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Trim28Q62318 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim28Q62318 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Trim28Q62318 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Trim28Q62318 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Filip1l-202ENSMUST00000159414 3253 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC14.35□□□□□ -0.11
Trim28Q62318 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC14.35□□□□□ -0.11
Trim28Q62318 4932438H23Rik-201ENSMUST00000035689 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Lypla1-202ENSMUST00000115529 930 ntTSL 2 BASIC14.35□□□□□ -0.11
Trim28Q62318 Gm12947-201ENSMUST00000116114 420 ntBASIC14.35□□□□□ -0.11
Trim28Q62318 Stk33-205ENSMUST00000141210 949 ntTSL 3 BASIC14.35□□□□□ -0.11
Trim28Q62318 Gm12056-201ENSMUST00000148364 1257 ntTSL 5 BASIC14.35□□□□□ -0.11
Trim28Q62318 Tpi1-203ENSMUST00000149610 802 ntTSL 2 BASIC14.35□□□□□ -0.11
Trim28Q62318 Platr17-201ENSMUST00000172817 807 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Gm29283-201ENSMUST00000187394 288 ntTSL 5 BASIC14.35□□□□□ -0.11
Trim28Q62318 Gm5865-201ENSMUST00000198713 637 ntBASIC14.35□□□□□ -0.11
Trim28Q62318 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 n-R5s71-201ENSMUST00000093668 119 ntBASIC14.35□□□□□ -0.11
Trim28Q62318 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Cpvl-202ENSMUST00000203101 1488 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Trim28Q62318 Gm6768-201ENSMUST00000022467 1878 ntBASIC14.35□□□□□ -0.11
Trim28Q62318 Npy1r-201ENSMUST00000039303 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 F730016J06Rik-201ENSMUST00000126140 1344 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Trim28Q62318 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Trim28Q62318 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Trim28Q62318 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim28Q62318 Bco1-203ENSMUST00000176860 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim28Q62318 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 56.5 ms