Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm25766-201ENSMUST00000104101 131 ntBASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm11451-201ENSMUST00000118946 630 ntBASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm13888-201ENSMUST00000119148 422 ntBASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm12516-201ENSMUST00000120819 385 ntBASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm9639-201ENSMUST00000172205 678 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm44329-201ENSMUST00000197469 112 ntBASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm30946-201ENSMUST00000198288 724 ntBASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm5051-201ENSMUST00000204085 485 ntBASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 AC114645.1-201ENSMUST00000215831 187 ntBASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Rufy2-202ENSMUST00000119567 4130 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Cbfa2t2-204ENSMUST00000109725 6080 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 AC124577.2-201ENSMUST00000217413 2420 ntBASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Gm14398-201ENSMUST00000117287 1073 ntBASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Gm9133-201ENSMUST00000118289 540 ntBASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Gm4917-201ENSMUST00000121452 650 ntBASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Gm5599-201ENSMUST00000209602 788 ntBASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Elf2-206ENSMUST00000163748 2656 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Gm5822-201ENSMUST00000161562 1378 ntBASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Upf3bQ3ULL6 Elovl7-201ENSMUST00000022207 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Dcun1d2-206ENSMUST00000203604 2112 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 AC169511.2-201ENSMUST00000226674 2063 ntBASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Gm26013-201ENSMUST00000104404 119 ntBASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Ppil2-202ENSMUST00000115719 838 ntTSL 2 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Gm22138-201ENSMUST00000158748 128 ntBASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Mir99ahg-209ENSMUST00000182820 835 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Gm8197-202ENSMUST00000193422 934 ntBASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Gm43622-201ENSMUST00000200140 2019 ntBASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 69.4 ms