Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC13.27□□□□□ -0.29
Rfx1P48377 Gpm6b-209ENSMUST00000112235 4480 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Rfx1P48377 Magt1-204ENSMUST00000151689 4531 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Rfx1P48377 Alas1-202ENSMUST00000112524 3089 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Rfx1P48377 Cdh1-203ENSMUST00000167688 3203 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Rfx1P48377 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Rfx1P48377 Ido1-202ENSMUST00000110667 1656 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Rfx1P48377 Unc45a-202ENSMUST00000107368 3635 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Rfx1P48377 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Rfx1P48377 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Rfx1P48377 Cdk5rap1-201ENSMUST00000028990 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Rfx1P48377 Nanog-201ENSMUST00000012540 2211 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Rfx1P48377 Fam90a1b-201ENSMUST00000044989 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Kalrn-205ENSMUST00000114953 4722 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Rtn4ip1-202ENSMUST00000105492 2059 ntTSL 3 BASIC13.26□□□□□ -0.29
Rfx1P48377 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Rps6ka6-204ENSMUST00000113428 4135 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Rfx1P48377 Gm13812-201ENSMUST00000118061 1347 ntBASIC13.26□□□□□ -0.29
Rfx1P48377 Gm13810-201ENSMUST00000118584 1347 ntBASIC13.26□□□□□ -0.29
Rfx1P48377 Synpo2l-203ENSMUST00000119483 3696 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Gm13665-201ENSMUST00000120830 528 ntBASIC13.26□□□□□ -0.29
Rfx1P48377 Gm15329-201ENSMUST00000121408 155 ntBASIC13.26□□□□□ -0.29
Rfx1P48377 Gm12715-201ENSMUST00000121430 1128 ntBASIC13.26□□□□□ -0.29
Rfx1P48377 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC13.26□□□□□ -0.29
Rfx1P48377 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC13.26□□□□□ -0.29
Rfx1P48377 BC035947-201ENSMUST00000170511 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC13.26□□□□□ -0.29
Rfx1P48377 Ccdc136-208ENSMUST00000180829 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Gm10827-201ENSMUST00000181897 2586 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC13.26□□□□□ -0.29
Rfx1P48377 Gm4857-201ENSMUST00000192718 785 ntBASIC13.26□□□□□ -0.29
Rfx1P48377 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC13.26□□□□□ -0.29
Rfx1P48377 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC13.26□□□□□ -0.29
Rfx1P48377 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC13.26□□□□□ -0.29
Rfx1P48377 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC13.26□□□□□ -0.29
Rfx1P48377 Rab3c-202ENSMUST00000223922 2398 ntBASIC13.26□□□□□ -0.29
Rfx1P48377 Nln-205ENSMUST00000224945 2486 ntBASIC13.26□□□□□ -0.29
Rfx1P48377 AC112945.1-201ENSMUST00000226413 514 ntBASIC13.26□□□□□ -0.29
Rfx1P48377 Qtrt2-201ENSMUST00000023387 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Galm-201ENSMUST00000039205 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Tsga8-201ENSMUST00000049420 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC13.26□□□□□ -0.29
Rfx1P48377 Exosc10-202ENSMUST00000076022 2682 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Ccin-201ENSMUST00000095107 1941 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Rfx1P48377 Zfp236-202ENSMUST00000182122 6059 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Itga11-201ENSMUST00000034774 4969 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Slitrk3-202ENSMUST00000192477 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Cnppd1-202ENSMUST00000168720 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Pnkd-202ENSMUST00000087225 2859 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Rfx1P48377 Cln3-204ENSMUST00000116269 2487 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
Rfx1P48377 Psat1-205ENSMUST00000162053 2291 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Stx1b-201ENSMUST00000106267 4536 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Asap1-202ENSMUST00000110114 4409 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Rfx1P48377 Myh1-203ENSMUST00000124516 6081 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Cyp2b10-202ENSMUST00000072438 1916 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Scamp1-203ENSMUST00000152555 1877 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Ankrd26-201ENSMUST00000112830 6930 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Rfx1P48377 Arid2-201ENSMUST00000096250 8507 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Rfx1P48377 Arhgap24-203ENSMUST00000094559 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 4930488L21Rik-202ENSMUST00000212638 3164 ntTSL 5 BASIC13.25□□□□□ -0.29
Rfx1P48377 Fmod-201ENSMUST00000048183 3120 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC13.25□□□□□ -0.29
Rfx1P48377 Pml-207ENSMUST00000135310 4413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
Rfx1P48377 Slc7a3-203ENSMUST00000113710 2750 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Rfx1P48377 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC13.25□□□□□ -0.29
Rfx1P48377 Ntrk3-205ENSMUST00000193002 2678 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Rfx1P48377 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Gm22323-201ENSMUST00000103832 109 ntBASIC13.25□□□□□ -0.29
Rfx1P48377 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Gm12579-201ENSMUST00000118040 783 ntBASIC13.25□□□□□ -0.29
Rfx1P48377 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Mup-ps29-201ENSMUST00000122281 202 ntBASIC13.25□□□□□ -0.29
Rfx1P48377 Gm12744-201ENSMUST00000146976 519 ntTSL 3 BASIC13.25□□□□□ -0.29
Rfx1P48377 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
Rfx1P48377 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Gm20482-202ENSMUST00000174729 825 ntBASIC13.25□□□□□ -0.29
Rfx1P48377 Igkv2-116-201ENSMUST00000199327 362 ntBASIC13.25□□□□□ -0.29
Rfx1P48377 Gm42588-201ENSMUST00000200538 1297 ntBASIC13.25□□□□□ -0.29
Rfx1P48377 Gm43084-201ENSMUST00000200696 947 ntBASIC13.25□□□□□ -0.29
Rfx1P48377 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC13.25□□□□□ -0.29
Rfx1P48377 Gm5996-201ENSMUST00000211110 718 ntBASIC13.25□□□□□ -0.29
Rfx1P48377 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 AC164437.3-201ENSMUST00000228323 347 ntBASIC13.25□□□□□ -0.29
Rfx1P48377 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Reps1-210ENSMUST00000164556 2537 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Nrf1-208ENSMUST00000115208 2492 ntTSL 5 BASIC13.25□□□□□ -0.29
Rfx1P48377 Lhx9-202ENSMUST00000046870 3645 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
Rfx1P48377 Pck2-201ENSMUST00000048781 3400 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Sept2-201ENSMUST00000027495 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Rfx1P48377 Ccar2-201ENSMUST00000035612 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms