Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC12.93□□□□□ -0.34
Col1a1P11087 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Col1a1P11087 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Col1a1P11087 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Gm31938-201ENSMUST00000218081 1818 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Zfand1-202ENSMUST00000108377 936 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Gm7861-201ENSMUST00000110749 506 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Gm7849-201ENSMUST00000110752 488 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Gm14231-201ENSMUST00000120090 592 ntBASIC12.92□□□□□ -0.34
Col1a1P11087 Gm15976-201ENSMUST00000129701 429 ntTSL 3 BASIC12.92□□□□□ -0.34
Col1a1P11087 Gm14717-201ENSMUST00000140450 649 ntTSL 3 BASIC12.92□□□□□ -0.34
Col1a1P11087 Gm24346-201ENSMUST00000158712 194 ntBASIC12.92□□□□□ -0.34
Col1a1P11087 Gm7539-201ENSMUST00000189789 630 ntBASIC12.92□□□□□ -0.34
Col1a1P11087 Gm31314-201ENSMUST00000201435 609 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Gm43997-201ENSMUST00000203986 1005 ntBASIC12.92□□□□□ -0.34
Col1a1P11087 Gm45893-201ENSMUST00000211899 247 ntBASIC12.92□□□□□ -0.34
Col1a1P11087 Gm29689-201ENSMUST00000221076 589 ntBASIC12.92□□□□□ -0.34
Col1a1P11087 Ssna1-201ENSMUST00000028342 862 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Clrn1-201ENSMUST00000051408 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Speer4f1-201ENSMUST00000076099 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Atxn7l1-203ENSMUST00000110824 1675 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Gm12716-201ENSMUST00000120606 1354 ntBASIC12.92□□□□□ -0.34
Col1a1P11087 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Col1a1P11087 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
Col1a1P11087 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC12.92□□□□□ -0.34
Col1a1P11087 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Ccdc130-201ENSMUST00000005120 1441 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Col1a1P11087 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Col1a1P11087 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC12.92□□□□□ -0.34
Col1a1P11087 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Ppid-201ENSMUST00000029382 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col1a1P11087 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Focad-202ENSMUST00000107147 1177 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Gm5148-203ENSMUST00000108105 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Gm14997-201ENSMUST00000119232 636 ntBASIC12.91□□□□□ -0.34
Col1a1P11087 Gm6939-201ENSMUST00000122029 864 ntBASIC12.91□□□□□ -0.34
Col1a1P11087 Vmn2r-ps9-201ENSMUST00000177446 1099 ntBASIC12.91□□□□□ -0.34
Col1a1P11087 Rhox12-203ENSMUST00000183737 761 ntTSL 3 BASIC12.91□□□□□ -0.34
Col1a1P11087 Sult2b1-207ENSMUST00000210754 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 AC163638.2-201ENSMUST00000224920 827 ntBASIC12.91□□□□□ -0.34
Col1a1P11087 AC102523.1-201ENSMUST00000228706 1144 ntBASIC12.91□□□□□ -0.34
Col1a1P11087 Cxcl10-201ENSMUST00000038816 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Vps25-201ENSMUST00000007533 615 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Col1a1P11087 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Col1a1P11087 Babam2-204ENSMUST00000114515 1497 ntTSL 5 BASIC12.91□□□□□ -0.34
Col1a1P11087 Mettl8-201ENSMUST00000090849 1842 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Col1a1P11087 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Stx17-203ENSMUST00000107721 1771 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Ttc1-201ENSMUST00000048578 1438 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Tex10-206ENSMUST00000164866 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Col1a1P11087 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col1a1P11087 Igll1-201ENSMUST00000100136 870 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Col1a1P11087 Gm13688-201ENSMUST00000121557 608 ntBASIC12.91□□□□□ -0.34
Col1a1P11087 Gm14699-201ENSMUST00000122340 228 ntBASIC12.91□□□□□ -0.34
Col1a1P11087 Gm16080-201ENSMUST00000152128 692 ntTSL 3 BASIC12.91□□□□□ -0.34
Col1a1P11087 Gm4868-201ENSMUST00000164138 789 ntBASIC12.91□□□□□ -0.34
Col1a1P11087 Gm7047-201ENSMUST00000196224 1063 ntBASIC12.91□□□□□ -0.34
Col1a1P11087 Gm9409-201ENSMUST00000197017 316 ntBASIC12.91□□□□□ -0.34
Col1a1P11087 Gm45090-201ENSMUST00000208775 1148 ntBASIC12.91□□□□□ -0.34
Col1a1P11087 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Col1a1P11087 Nudt7-203ENSMUST00000109109 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Slc25a25-202ENSMUST00000052119 3529 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Bora-201ENSMUST00000022656 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col1a1P11087 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms