Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC9□□□□□ -0.97
Hoxd3P09027 Gm44742-201ENSMUST00000207190 1412 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC9□□□□□ -0.97
Hoxd3P09027 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Nppb-201ENSMUST00000103231 781 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Dnhd1-201ENSMUST00000106776 1146 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
Hoxd3P09027 Gm12792-201ENSMUST00000117669 1019 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Gm13888-201ENSMUST00000119148 422 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Gm14585-201ENSMUST00000120713 634 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Gm7150-201ENSMUST00000122032 981 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC9□□□□□ -0.97
Hoxd3P09027 Gm11292-201ENSMUST00000146121 1153 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC9□□□□□ -0.97
Hoxd3P09027 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Hoxd3P09027 Mir3473a-201ENSMUST00000175011 78 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Asb4-202ENSMUST00000183358 1143 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Tac1-203ENSMUST00000184986 691 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Gm28917-201ENSMUST00000187294 237 ntBASIC9□□□□□ -0.97
Hoxd3P09027 5031425E22Rik-205ENSMUST00000191186 719 ntTSL 3 BASIC9□□□□□ -0.97
Hoxd3P09027 Ighv5-11-201ENSMUST00000193354 371 ntBASIC9□□□□□ -0.97
Hoxd3P09027 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Ighv8-1-201ENSMUST00000194897 291 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Gm38268-201ENSMUST00000195813 193 ntBASIC9□□□□□ -0.97
Hoxd3P09027 9430087B13Rik-201ENSMUST00000196548 1085 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC9□□□□□ -0.97
Hoxd3P09027 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Hoxd3P09027 Gm45550-201ENSMUST00000209380 946 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Hoxd3P09027 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC9□□□□□ -0.97
Hoxd3P09027 Olfr602-ps1-202ENSMUST00000218213 1169 ntTSL 5 BASIC9□□□□□ -0.97
Hoxd3P09027 Gm18242-201ENSMUST00000218455 542 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Gm19169-201ENSMUST00000220109 1246 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Gm18974-201ENSMUST00000221478 1031 ntBASIC9□□□□□ -0.97
Hoxd3P09027 AC122350.1-201ENSMUST00000228135 533 ntBASIC9□□□□□ -0.97
Hoxd3P09027 CT025523.1-201ENSMUST00000228318 694 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hoxd3P09027 Olfr768-201ENSMUST00000063031 939 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hoxd3P09027 Gm5471-201ENSMUST00000072732 337 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Vmn1r216-201ENSMUST00000080253 1059 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hoxd3P09027 Olfr1474-201ENSMUST00000096202 945 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hoxd3P09027 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC9□□□□□ -0.97
Hoxd3P09027 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hoxd3P09027 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 AC131068.3-201ENSMUST00000228438 1456 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Zwilch-209ENSMUST00000176299 1831 ntTSL 5 BASIC9□□□□□ -0.97
Hoxd3P09027 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Hoxd3P09027 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Smad9-201ENSMUST00000029371 5368 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC9□□□□□ -0.97
Hoxd3P09027 Serpinb6c-202ENSMUST00000172184 1327 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hoxd3P09027 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Mir124-2hg-204ENSMUST00000188983 1365 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 AC153524.2-201ENSMUST00000218351 1375 ntTSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 AC154517.2-201ENSMUST00000220829 2458 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms