Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 n-R5s118-201ENSMUST00000179887 119 ntBASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Gm44511-201ENSMUST00000204394 678 ntAPPRIS P5 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Gm44511-202ENSMUST00000204423 678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Gm44753-202ENSMUST00000208297 562 ntTSL 5 BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Gm45542-201ENSMUST00000210456 438 ntTSL 2 BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 AC122860.1-201ENSMUST00000217669 773 ntTSL 3 BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Tcl1b5-201ENSMUST00000000717 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Rpl3-201ENSMUST00000081650 1293 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Acyp1-201ENSMUST00000008966 648 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Gm33366-201ENSMUST00000195583 3827 ntBASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Adck1-201ENSMUST00000101165 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 AC153380.1-201ENSMUST00000214959 2364 ntBASIC15.25■□□□□ 0.03
Usp40Q8BWR4 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Olfr29-ps1-201ENSMUST00000117959 963 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Gm12745-201ENSMUST00000121767 214 ntBASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Pax5-209ENSMUST00000165417 1056 ntTSL 5 BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Gm27440-201ENSMUST00000184785 107 ntBASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Ighv1-2-201ENSMUST00000195325 378 ntBASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Gm9791-201ENSMUST00000060997 447 ntBASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Psd3-213ENSMUST00000212505 3253 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Gm43167-201ENSMUST00000202001 1606 ntBASIC15.25■□□□□ 0.03
Usp40Q8BWR4 C530044C16Rik-201ENSMUST00000204275 1624 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Usp40Q8BWR4 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Mtch2-202ENSMUST00000111467 2281 ntTSL 5 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Gm13871-202ENSMUST00000107319 1324 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Snx27-208ENSMUST00000200642 1308 ntTSL 5 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Nek3-204ENSMUST00000178324 1989 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Gm22594-201ENSMUST00000104251 130 ntBASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Bglap3-203ENSMUST00000107543 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Gm13707-201ENSMUST00000123663 600 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Gm13709-201ENSMUST00000138573 614 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Atad3aos-202ENSMUST00000150777 650 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Gm12426-201ENSMUST00000153083 371 ntTSL 5 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Gm43460-201ENSMUST00000202491 1057 ntBASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Gm45135-201ENSMUST00000206787 1184 ntBASIC15.24■□□□□ 0.03
Usp40Q8BWR4 AC163703.1-201ENSMUST00000214133 339 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 AC170597.1-201ENSMUST00000221956 440 ntTSL 2 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 AC158986.2-201ENSMUST00000227487 618 ntBASIC15.24■□□□□ 0.03
Usp40Q8BWR4 AC142266.1-201ENSMUST00000228107 415 ntBASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Olfr963-201ENSMUST00000073433 936 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Tspan8-202ENSMUST00000080630 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Tex45-201ENSMUST00000047265 1613 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Gm42498-201ENSMUST00000199981 1372 ntBASIC15.24■□□□□ 0.03
Usp40Q8BWR4 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Ccr6-205ENSMUST00000177568 1334 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Gm1826-201ENSMUST00000118646 1162 ntBASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Gm5555-201ENSMUST00000120352 1111 ntBASIC15.23■□□□□ 0.03
Usp40Q8BWR4 Ube2d-ps-201ENSMUST00000121354 441 ntBASIC15.23■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms