Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Ngp-201ENSMUST00000035061 1222 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Prl7b1-201ENSMUST00000080595 925 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Dcpp2-201ENSMUST00000088598 611 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Olfr171-202ENSMUST00000205467 1406 ntAPPRIS ALT1 TSL 2 BASIC10.63□□□□□ -0.71
Cdx2P43241 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC10.63□□□□□ -0.71
Cdx2P43241 Impdh2-ps-201ENSMUST00000120826 1545 ntBASIC10.63□□□□□ -0.71
Cdx2P43241 Tbp-203ENSMUST00000118001 1652 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 AC113282.5-201ENSMUST00000224330 1679 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Cdx2P43241 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Zfp286-202ENSMUST00000108705 1979 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Cdx2P43241 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Cdx2P43241 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC10.63□□□□□ -0.71
Cdx2P43241 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Cdx2P43241 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC10.62□□□□□ -0.71
Cdx2P43241 Prr16-201ENSMUST00000116639 2224 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Gm42432-201ENSMUST00000197902 1617 ntBASIC10.62□□□□□ -0.71
Cdx2P43241 Ptpn2-202ENSMUST00000120934 1497 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Cdx2P43241 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Rps6ka6-204ENSMUST00000113428 4135 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Cdx2P43241 Selenbp2-204ENSMUST00000173849 1323 ntTSL 5 BASIC10.62□□□□□ -0.71
Cdx2P43241 Stk31-201ENSMUST00000024171 3237 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Klf3-202ENSMUST00000166409 1562 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC10.62□□□□□ -0.71
Cdx2P43241 Psmc1-201ENSMUST00000021595 1591 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Gm8020-201ENSMUST00000170174 1406 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Cdx2P43241 Gm23255-201ENSMUST00000102244 110 ntBASIC10.62□□□□□ -0.71
Cdx2P43241 Pex5l-203ENSMUST00000108221 1187 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Atp5g3-202ENSMUST00000111996 723 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
Cdx2P43241 Trub2-203ENSMUST00000113807 1035 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC10.62□□□□□ -0.71
Cdx2P43241 Gm5944-201ENSMUST00000118182 1001 ntBASIC10.62□□□□□ -0.71
Cdx2P43241 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Scgb2b25-ps-201ENSMUST00000121936 307 ntBASIC10.62□□□□□ -0.71
Cdx2P43241 Gm12426-201ENSMUST00000153083 371 ntTSL 5 BASIC10.62□□□□□ -0.71
Cdx2P43241 Gm17226-201ENSMUST00000166637 780 ntTSL 3 BASIC10.62□□□□□ -0.71
Cdx2P43241 Cd79b-202ENSMUST00000167143 1195 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Gm7627-201ENSMUST00000183205 999 ntBASIC10.62□□□□□ -0.71
Cdx2P43241 Gm18014-201ENSMUST00000183369 817 ntBASIC10.62□□□□□ -0.71
Cdx2P43241 Gm37207-201ENSMUST00000194284 296 ntBASIC10.62□□□□□ -0.71
Cdx2P43241 Gm42511-201ENSMUST00000196160 234 ntBASIC10.62□□□□□ -0.71
Cdx2P43241 Rpl15-ps5-201ENSMUST00000205636 605 ntBASIC10.62□□□□□ -0.71
Cdx2P43241 AC164429.1-201ENSMUST00000224210 518 ntBASIC10.62□□□□□ -0.71
Cdx2P43241 Olfr700-201ENSMUST00000079936 951 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Cdx2P43241 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Cdx2P43241 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Cdx2P43241 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Cdx2P43241 Gm42498-201ENSMUST00000199981 1372 ntBASIC10.62□□□□□ -0.71
Cdx2P43241 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Gm31718-201ENSMUST00000212406 1646 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cdx2P43241 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC10.62□□□□□ -0.71
Cdx2P43241 Vcp-rs-201ENSMUST00000120233 2406 ntBASIC10.62□□□□□ -0.71
Cdx2P43241 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx2P43241 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx2P43241 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Cdx2P43241 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx2P43241 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC10.61□□□□□ -0.71
Cdx2P43241 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx2P43241 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx2P43241 Slitrk4-202ENSMUST00000114679 3513 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx2P43241 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx2P43241 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx2P43241 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx2P43241 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx2P43241 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx2P43241 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Cdx2P43241 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
Cdx2P43241 Ptgds-203ENSMUST00000114259 775 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
Cdx2P43241 Gm12947-201ENSMUST00000116114 420 ntBASIC10.61□□□□□ -0.71
Cdx2P43241 Gm12745-201ENSMUST00000121767 214 ntBASIC10.61□□□□□ -0.71
Cdx2P43241 Gm15912-201ENSMUST00000128914 578 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx2P43241 Gm13412-201ENSMUST00000150621 677 ntTSL 3 BASIC10.61□□□□□ -0.71
Cdx2P43241 Gm26313-201ENSMUST00000157770 308 ntBASIC10.61□□□□□ -0.71
Cdx2P43241 Anp32e-206ENSMUST00000169426 915 ntTSL 5 BASIC10.61□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 60.3 ms