Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Gm14071-201ENSMUST00000117817 509 ntBASIC9.18□□□□□ -0.94
Hmgb3O54879 Gm11478-201ENSMUST00000117851 599 ntBASIC9.18□□□□□ -0.94
Hmgb3O54879 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC9.18□□□□□ -0.94
Hmgb3O54879 Gm13347-201ENSMUST00000120298 1353 ntBASIC9.18□□□□□ -0.94
Hmgb3O54879 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Uimc1-204ENSMUST00000127195 2936 ntAPPRIS ALT2 TSL 5 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Fto-203ENSMUST00000128081 4707 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Gm3329-201ENSMUST00000159873 556 ntBASIC9.18□□□□□ -0.94
Hmgb3O54879 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC9.18□□□□□ -0.94
Hmgb3O54879 Eif4g2-206ENSMUST00000161051 3548 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Gm8565-201ENSMUST00000183259 1014 ntBASIC9.18□□□□□ -0.94
Hmgb3O54879 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Gm10417-201ENSMUST00000194341 3522 ntBASIC9.18□□□□□ -0.94
Hmgb3O54879 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Olfr1349-207ENSMUST00000216447 2448 ntAPPRIS P1 TSL 5 BASIC9.18□□□□□ -0.94
Hmgb3O54879 CU024892.2-201ENSMUST00000224608 832 ntBASIC9.18□□□□□ -0.94
Hmgb3O54879 AC154222.2-201ENSMUST00000225848 607 ntBASIC9.18□□□□□ -0.94
Hmgb3O54879 AC154462.2-201ENSMUST00000227519 370 ntBASIC9.18□□□□□ -0.94
Hmgb3O54879 Tab1-201ENSMUST00000023050 2931 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Mroh2b-201ENSMUST00000045736 4829 ntAPPRIS P1 TSL 5 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Habp2-201ENSMUST00000078284 2314 ntAPPRIS ALT2 TSL 5 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Prpf8-202ENSMUST00000102510 7249 ntAPPRIS P1 TSL 5 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Arel1-201ENSMUST00000043169 5446 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Satb1-207ENSMUST00000140979 3748 ntAPPRIS ALT2 TSL 5 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Tra2b-204ENSMUST00000161286 3403 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Tg-201ENSMUST00000065916 8454 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Gria1-204ENSMUST00000151045 5361 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Odf2l-202ENSMUST00000098538 2564 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Cfap54-201ENSMUST00000020200 2473 ntAPPRIS ALT2 TSL 5 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Dpf2-202ENSMUST00000118623 2406 ntTSL 5 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Snx31-203ENSMUST00000161202 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Trpm3-206ENSMUST00000099569 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Ctnnd1-210ENSMUST00000111684 6021 ntTSL 5 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Agpat3-204ENSMUST00000105389 3678 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Arhgap15os-201ENSMUST00000139948 1761 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Gm8752-201ENSMUST00000173427 1694 ntBASIC9.17□□□□□ -0.94
Hmgb3O54879 Kcne2-201ENSMUST00000047383 1690 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 CT010447.1-201ENSMUST00000225657 1608 ntBASIC9.17□□□□□ -0.94
Hmgb3O54879 1810053B23Rik-205ENSMUST00000188056 1592 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Zfp872-202ENSMUST00000178901 2958 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Luzp1-203ENSMUST00000105849 7438 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Prdm11-202ENSMUST00000111274 11678 ntTSL 5 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Cntrl-212ENSMUST00000156933 7189 ntAPPRIS ALT2 TSL 5 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Elovl5-201ENSMUST00000034904 2782 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Zfp652-201ENSMUST00000091565 2663 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Dhtkd1-201ENSMUST00000026924 3852 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Mir1247-201ENSMUST00000116706 82 ntBASIC9.17□□□□□ -0.94
Hmgb3O54879 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC9.17□□□□□ -0.94
Hmgb3O54879 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC9.17□□□□□ -0.94
Hmgb3O54879 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Gm32856-201ENSMUST00000212145 3767 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Aktip-203ENSMUST00000120349 2153 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Sh3gl2-204ENSMUST00000107189 3231 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Cdh1-203ENSMUST00000167688 3203 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Elmo2-201ENSMUST00000071699 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Azin1-203ENSMUST00000110329 4217 ntAPPRIS P1 TSL 2 BASIC9.17□□□□□ -0.94
Hmgb3O54879 Ptbp3-201ENSMUST00000030076 6855 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Top1-201ENSMUST00000109468 3856 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Gtf2ird1-204ENSMUST00000100652 3693 ntAPPRIS P4 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Brat1-202ENSMUST00000100505 3431 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hmgb3O54879 Stag1-201ENSMUST00000041418 5909 ntTSL 5 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Rnf43-202ENSMUST00000092800 4037 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
Retrieved 100 of 76,532 protein–RNA pairs in 65 ms