Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdc40Q9DC48 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Cdc40Q9DC48 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
Cdc40Q9DC48 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdc40Q9DC48 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdc40Q9DC48 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdc40Q9DC48 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Cdc40Q9DC48 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Cdc40Q9DC48 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cdc40Q9DC48 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cdc40Q9DC48 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC18.7■□□□□ 0.58
Cdc40Q9DC48 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cdc40Q9DC48 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cdc40Q9DC48 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.7■□□□□ 0.58
Cdc40Q9DC48 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Cdc40Q9DC48 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC18.7■□□□□ 0.58
Cdc40Q9DC48 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Cdc40Q9DC48 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cdc40Q9DC48 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cdc40Q9DC48 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.69■□□□□ 0.58
Cdc40Q9DC48 Gm27454-201ENSMUST00000185090 204 ntBASIC18.69■□□□□ 0.58
Cdc40Q9DC48 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cdc40Q9DC48 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cdc40Q9DC48 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cdc40Q9DC48 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.69■□□□□ 0.58
Cdc40Q9DC48 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cdc40Q9DC48 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Cdc40Q9DC48 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Cdc40Q9DC48 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cdc40Q9DC48 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cdc40Q9DC48 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC18.68■□□□□ 0.58
Cdc40Q9DC48 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cdc40Q9DC48 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cdc40Q9DC48 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cdc40Q9DC48 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cdc40Q9DC48 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cdc40Q9DC48 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdc40Q9DC48 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdc40Q9DC48 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
Cdc40Q9DC48 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdc40Q9DC48 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdc40Q9DC48 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Cdc40Q9DC48 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC18.67■□□□□ 0.58
Cdc40Q9DC48 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdc40Q9DC48 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdc40Q9DC48 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdc40Q9DC48 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC18.66■□□□□ 0.58
Cdc40Q9DC48 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cdc40Q9DC48 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Cdc40Q9DC48 Gm45417-201ENSMUST00000209533 758 ntBASIC18.66■□□□□ 0.58
Cdc40Q9DC48 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC18.66■□□□□ 0.58
Cdc40Q9DC48 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cdc40Q9DC48 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cdc40Q9DC48 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
Cdc40Q9DC48 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC18.65■□□□□ 0.58
Cdc40Q9DC48 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Cdc40Q9DC48 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cdc40Q9DC48 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cdc40Q9DC48 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cdc40Q9DC48 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cdc40Q9DC48 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Cdc40Q9DC48 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Cdc40Q9DC48 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.64■□□□□ 0.58
Cdc40Q9DC48 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC18.64■□□□□ 0.57
Cdc40Q9DC48 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Cdc40Q9DC48 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cdc40Q9DC48 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Cdc40Q9DC48 Gm9207-201ENSMUST00000198773 1115 ntBASIC18.64■□□□□ 0.57
Cdc40Q9DC48 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC18.64■□□□□ 0.57
Cdc40Q9DC48 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cdc40Q9DC48 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Cdc40Q9DC48 Gm4430-201ENSMUST00000192413 1943 ntBASIC18.64■□□□□ 0.57
Cdc40Q9DC48 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
Cdc40Q9DC48 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cdc40Q9DC48 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC18.64■□□□□ 0.57
Cdc40Q9DC48 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cdc40Q9DC48 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdc40Q9DC48 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Cdc40Q9DC48 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdc40Q9DC48 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC18.63■□□□□ 0.57
Cdc40Q9DC48 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cdc40Q9DC48 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdc40Q9DC48 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdc40Q9DC48 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdc40Q9DC48 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdc40Q9DC48 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdc40Q9DC48 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdc40Q9DC48 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.63■□□□□ 0.57
Cdc40Q9DC48 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdc40Q9DC48 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdc40Q9DC48 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdc40Q9DC48 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdc40Q9DC48 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cdc40Q9DC48 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cdc40Q9DC48 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdc40Q9DC48 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cdc40Q9DC48 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdc40Q9DC48 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Cdc40Q9DC48 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdc40Q9DC48 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms