Protein–RNA interactions for Protein: Q99LI7

Cstf3, Cleavage stimulation factor subunit 3, mousemouse

Known RBP Predictions only

Length 717 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf3Q99LI7 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cstf3Q99LI7 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC19.51■□□□□ 0.71
Cstf3Q99LI7 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cstf3Q99LI7 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Cstf3Q99LI7 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cstf3Q99LI7 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Cstf3Q99LI7 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cstf3Q99LI7 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cstf3Q99LI7 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cstf3Q99LI7 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Cstf3Q99LI7 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.5■□□□□ 0.71
Cstf3Q99LI7 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC19.5■□□□□ 0.71
Cstf3Q99LI7 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Cstf3Q99LI7 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC19.5■□□□□ 0.71
Cstf3Q99LI7 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cstf3Q99LI7 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cstf3Q99LI7 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.5■□□□□ 0.71
Cstf3Q99LI7 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cstf3Q99LI7 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Cstf3Q99LI7 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Cstf3Q99LI7 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.49■□□□□ 0.71
Cstf3Q99LI7 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Cstf3Q99LI7 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC19.49■□□□□ 0.71
Cstf3Q99LI7 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Cstf3Q99LI7 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.48■□□□□ 0.71
Cstf3Q99LI7 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cstf3Q99LI7 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cstf3Q99LI7 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Cstf3Q99LI7 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cstf3Q99LI7 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cstf3Q99LI7 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Cstf3Q99LI7 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cstf3Q99LI7 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cstf3Q99LI7 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Cstf3Q99LI7 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cstf3Q99LI7 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cstf3Q99LI7 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.47■□□□□ 0.71
Cstf3Q99LI7 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC19.47■□□□□ 0.71
Cstf3Q99LI7 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Cstf3Q99LI7 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cstf3Q99LI7 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
Cstf3Q99LI7 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Cstf3Q99LI7 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Cstf3Q99LI7 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Cstf3Q99LI7 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cstf3Q99LI7 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.46■□□□□ 0.71
Cstf3Q99LI7 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cstf3Q99LI7 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cstf3Q99LI7 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Cstf3Q99LI7 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC19.45■□□□□ 0.7
Cstf3Q99LI7 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC19.45■□□□□ 0.7
Cstf3Q99LI7 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Cstf3Q99LI7 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cstf3Q99LI7 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.45■□□□□ 0.7
Cstf3Q99LI7 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC19.45■□□□□ 0.7
Cstf3Q99LI7 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cstf3Q99LI7 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cstf3Q99LI7 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC19.45■□□□□ 0.7
Cstf3Q99LI7 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cstf3Q99LI7 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cstf3Q99LI7 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cstf3Q99LI7 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Cstf3Q99LI7 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cstf3Q99LI7 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cstf3Q99LI7 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cstf3Q99LI7 Gm7143-201ENSMUST00000222811 859 ntBASIC19.43■□□□□ 0.7
Cstf3Q99LI7 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cstf3Q99LI7 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Cstf3Q99LI7 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cstf3Q99LI7 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Cstf3Q99LI7 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cstf3Q99LI7 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cstf3Q99LI7 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Cstf3Q99LI7 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cstf3Q99LI7 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cstf3Q99LI7 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC19.42■□□□□ 0.7
Cstf3Q99LI7 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cstf3Q99LI7 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cstf3Q99LI7 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC19.42■□□□□ 0.7
Cstf3Q99LI7 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cstf3Q99LI7 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cstf3Q99LI7 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cstf3Q99LI7 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cstf3Q99LI7 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.41■□□□□ 0.7
Cstf3Q99LI7 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cstf3Q99LI7 Gm15820-201ENSMUST00000201566 728 ntBASIC19.41■□□□□ 0.7
Cstf3Q99LI7 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms