Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28bQ8CEG5 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28bQ8CEG5 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Ccdc28bQ8CEG5 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.94■□□□□ 0.78
Ccdc28bQ8CEG5 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28bQ8CEG5 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28bQ8CEG5 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28bQ8CEG5 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.93■□□□□ 0.78
Ccdc28bQ8CEG5 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc28bQ8CEG5 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.93■□□□□ 0.78
Ccdc28bQ8CEG5 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc28bQ8CEG5 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc28bQ8CEG5 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Ccdc28bQ8CEG5 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Ccdc28bQ8CEG5 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28bQ8CEG5 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28bQ8CEG5 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28bQ8CEG5 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28bQ8CEG5 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28bQ8CEG5 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28bQ8CEG5 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28bQ8CEG5 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28bQ8CEG5 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28bQ8CEG5 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28bQ8CEG5 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.91■□□□□ 0.78
Ccdc28bQ8CEG5 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28bQ8CEG5 Gm43182-201ENSMUST00000199476 2528 ntBASIC19.91■□□□□ 0.78
Ccdc28bQ8CEG5 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28bQ8CEG5 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28bQ8CEG5 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28bQ8CEG5 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28bQ8CEG5 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28bQ8CEG5 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28bQ8CEG5 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Ccdc28bQ8CEG5 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28bQ8CEG5 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28bQ8CEG5 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28bQ8CEG5 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28bQ8CEG5 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28bQ8CEG5 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28bQ8CEG5 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28bQ8CEG5 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.89■□□□□ 0.77
Ccdc28bQ8CEG5 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.89■□□□□ 0.77
Ccdc28bQ8CEG5 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28bQ8CEG5 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28bQ8CEG5 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC19.89■□□□□ 0.77
Ccdc28bQ8CEG5 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28bQ8CEG5 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28bQ8CEG5 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28bQ8CEG5 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28bQ8CEG5 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28bQ8CEG5 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28bQ8CEG5 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28bQ8CEG5 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28bQ8CEG5 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28bQ8CEG5 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.88■□□□□ 0.77
Ccdc28bQ8CEG5 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28bQ8CEG5 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC19.88■□□□□ 0.77
Ccdc28bQ8CEG5 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28bQ8CEG5 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28bQ8CEG5 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28bQ8CEG5 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28bQ8CEG5 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28bQ8CEG5 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28bQ8CEG5 Gm14523-201ENSMUST00000117260 558 ntBASIC19.87■□□□□ 0.77
Ccdc28bQ8CEG5 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.87■□□□□ 0.77
Ccdc28bQ8CEG5 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28bQ8CEG5 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28bQ8CEG5 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28bQ8CEG5 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28bQ8CEG5 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Ccdc28bQ8CEG5 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28bQ8CEG5 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28bQ8CEG5 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.86■□□□□ 0.77
Ccdc28bQ8CEG5 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28bQ8CEG5 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28bQ8CEG5 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28bQ8CEG5 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Gm27502-201ENSMUST00000183495 199 ntBASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.85■□□□□ 0.77
Ccdc28bQ8CEG5 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28bQ8CEG5 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28bQ8CEG5 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28bQ8CEG5 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC19.84■□□□□ 0.77
Ccdc28bQ8CEG5 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28bQ8CEG5 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28bQ8CEG5 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms