Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Ube3dQ8BX13 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC17.89■□□□□ 0.45
Ube3dQ8BX13 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC17.89■□□□□ 0.45
Ube3dQ8BX13 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ube3dQ8BX13 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ube3dQ8BX13 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ube3dQ8BX13 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC17.89■□□□□ 0.45
Ube3dQ8BX13 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Golph3-202ENSMUST00000226517 2359 ntBASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ube3dQ8BX13 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ube3dQ8BX13 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ube3dQ8BX13 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ube3dQ8BX13 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC17.87■□□□□ 0.45
Ube3dQ8BX13 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ube3dQ8BX13 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ube3dQ8BX13 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ube3dQ8BX13 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ube3dQ8BX13 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ube3dQ8BX13 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ube3dQ8BX13 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ube3dQ8BX13 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ube3dQ8BX13 Gm43034-201ENSMUST00000198678 1364 ntBASIC17.86■□□□□ 0.45
Ube3dQ8BX13 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
Ube3dQ8BX13 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ube3dQ8BX13 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC17.86■□□□□ 0.45
Ube3dQ8BX13 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ube3dQ8BX13 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ube3dQ8BX13 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Ube3dQ8BX13 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ube3dQ8BX13 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ube3dQ8BX13 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ube3dQ8BX13 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ube3dQ8BX13 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC17.85■□□□□ 0.45
Ube3dQ8BX13 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Ube3dQ8BX13 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Ube3dQ8BX13 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Ube3dQ8BX13 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC17.85■□□□□ 0.45
Ube3dQ8BX13 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ube3dQ8BX13 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ube3dQ8BX13 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Gm12922-201ENSMUST00000120626 809 ntBASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ube3dQ8BX13 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Ube3dQ8BX13 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ube3dQ8BX13 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC17.83■□□□□ 0.44
Ube3dQ8BX13 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC17.83■□□□□ 0.44
Ube3dQ8BX13 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Ube3dQ8BX13 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ube3dQ8BX13 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Ube3dQ8BX13 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ube3dQ8BX13 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ube3dQ8BX13 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Ube3dQ8BX13 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Ube3dQ8BX13 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ube3dQ8BX13 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ube3dQ8BX13 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC17.82■□□□□ 0.44
Ube3dQ8BX13 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC17.82■□□□□ 0.44
Ube3dQ8BX13 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ube3dQ8BX13 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ube3dQ8BX13 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ube3dQ8BX13 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ube3dQ8BX13 Gm44949-201ENSMUST00000206423 1450 ntBASIC17.82■□□□□ 0.44
Ube3dQ8BX13 Snhg20-203ENSMUST00000182811 2153 ntBASIC17.81■□□□□ 0.44
Ube3dQ8BX13 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Ube3dQ8BX13 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ube3dQ8BX13 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC17.81■□□□□ 0.44
Ube3dQ8BX13 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Ube3dQ8BX13 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ube3dQ8BX13 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC17.81■□□□□ 0.44
Ube3dQ8BX13 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Ube3dQ8BX13 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ube3dQ8BX13 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Ube3dQ8BX13 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Ube3dQ8BX13 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ube3dQ8BX13 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ube3dQ8BX13 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC17.8■□□□□ 0.44
Ube3dQ8BX13 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ube3dQ8BX13 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms