Protein–RNA interactions for Protein: Q8BGY9

Slc5a7, High affinity choline transporter 1, mousemouse

Predictions only

Length 580 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc5a7Q8BGY9 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Slc5a7Q8BGY9 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Slc5a7Q8BGY9 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Slc5a7Q8BGY9 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Slc5a7Q8BGY9 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Slc5a7Q8BGY9 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC17.71■□□□□ 0.43
Slc5a7Q8BGY9 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Slc5a7Q8BGY9 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Slc5a7Q8BGY9 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC17.7■□□□□ 0.42
Slc5a7Q8BGY9 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Slc5a7Q8BGY9 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Slc5a7Q8BGY9 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Slc5a7Q8BGY9 AC151971.4-201ENSMUST00000214717 704 ntBASIC17.7■□□□□ 0.42
Slc5a7Q8BGY9 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Slc5a7Q8BGY9 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Slc5a7Q8BGY9 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Slc5a7Q8BGY9 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Slc5a7Q8BGY9 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Slc5a7Q8BGY9 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Slc5a7Q8BGY9 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Slc5a7Q8BGY9 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Slc5a7Q8BGY9 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC17.69■□□□□ 0.42
Slc5a7Q8BGY9 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC17.69■□□□□ 0.42
Slc5a7Q8BGY9 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Slc5a7Q8BGY9 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Slc5a7Q8BGY9 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Slc5a7Q8BGY9 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Slc5a7Q8BGY9 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC17.68■□□□□ 0.42
Slc5a7Q8BGY9 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Slc5a7Q8BGY9 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC17.68■□□□□ 0.42
Slc5a7Q8BGY9 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Slc5a7Q8BGY9 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Slc5a7Q8BGY9 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Slc5a7Q8BGY9 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Slc5a7Q8BGY9 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Slc5a7Q8BGY9 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Slc5a7Q8BGY9 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
Slc5a7Q8BGY9 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Slc5a7Q8BGY9 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Slc5a7Q8BGY9 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Slc5a7Q8BGY9 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Slc5a7Q8BGY9 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Slc5a7Q8BGY9 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Slc5a7Q8BGY9 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Slc5a7Q8BGY9 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC17.66■□□□□ 0.42
Slc5a7Q8BGY9 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Slc5a7Q8BGY9 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC17.66■□□□□ 0.42
Slc5a7Q8BGY9 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Slc5a7Q8BGY9 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Slc5a7Q8BGY9 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Slc5a7Q8BGY9 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Slc5a7Q8BGY9 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Slc5a7Q8BGY9 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.65■□□□□ 0.42
Slc5a7Q8BGY9 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Slc5a7Q8BGY9 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Slc5a7Q8BGY9 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Slc5a7Q8BGY9 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Slc5a7Q8BGY9 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.65■□□□□ 0.42
Slc5a7Q8BGY9 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Slc5a7Q8BGY9 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Slc5a7Q8BGY9 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Slc5a7Q8BGY9 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Slc5a7Q8BGY9 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Slc5a7Q8BGY9 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC17.64■□□□□ 0.41
Slc5a7Q8BGY9 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Slc5a7Q8BGY9 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Slc5a7Q8BGY9 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Slc5a7Q8BGY9 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Slc5a7Q8BGY9 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Slc5a7Q8BGY9 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Slc5a7Q8BGY9 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Slc5a7Q8BGY9 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Slc5a7Q8BGY9 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Slc5a7Q8BGY9 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Slc5a7Q8BGY9 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC17.62■□□□□ 0.41
Slc5a7Q8BGY9 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Slc5a7Q8BGY9 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Slc5a7Q8BGY9 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Slc5a7Q8BGY9 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Slc5a7Q8BGY9 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
Slc5a7Q8BGY9 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Slc5a7Q8BGY9 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Slc5a7Q8BGY9 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Slc5a7Q8BGY9 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Slc5a7Q8BGY9 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Slc5a7Q8BGY9 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC17.61■□□□□ 0.41
Slc5a7Q8BGY9 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.61■□□□□ 0.41
Slc5a7Q8BGY9 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC17.61■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms