Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Hmgb4Q6P8W9 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Hmgb4Q6P8W9 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Hmgb4Q6P8W9 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Hmgb4Q6P8W9 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Hmgb4Q6P8W9 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Hmgb4Q6P8W9 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Hmgb4Q6P8W9 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC21.08■□□□□ 0.97
Hmgb4Q6P8W9 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Hmgb4Q6P8W9 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC21.08■□□□□ 0.96
Hmgb4Q6P8W9 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
Hmgb4Q6P8W9 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Hmgb4Q6P8W9 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb4Q6P8W9 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb4Q6P8W9 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb4Q6P8W9 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb4Q6P8W9 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb4Q6P8W9 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb4Q6P8W9 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb4Q6P8W9 Flvcr1-202ENSMUST00000191946 1216 ntBASIC21.05■□□□□ 0.96
Hmgb4Q6P8W9 Gm8493-201ENSMUST00000196881 489 ntBASIC21.05■□□□□ 0.96
Hmgb4Q6P8W9 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb4Q6P8W9 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb4Q6P8W9 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.04■□□□□ 0.96
Hmgb4Q6P8W9 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC21.04■□□□□ 0.96
Hmgb4Q6P8W9 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb4Q6P8W9 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb4Q6P8W9 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb4Q6P8W9 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC21.04■□□□□ 0.96
Hmgb4Q6P8W9 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb4Q6P8W9 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb4Q6P8W9 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb4Q6P8W9 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC21.04■□□□□ 0.96
Hmgb4Q6P8W9 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.03■□□□□ 0.96
Hmgb4Q6P8W9 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb4Q6P8W9 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb4Q6P8W9 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb4Q6P8W9 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.02■□□□□ 0.96
Hmgb4Q6P8W9 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.02■□□□□ 0.96
Hmgb4Q6P8W9 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb4Q6P8W9 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.02■□□□□ 0.96
Hmgb4Q6P8W9 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb4Q6P8W9 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
Hmgb4Q6P8W9 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC21.01■□□□□ 0.95
Hmgb4Q6P8W9 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb4Q6P8W9 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb4Q6P8W9 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
Hmgb4Q6P8W9 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Hmgb4Q6P8W9 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.01■□□□□ 0.95
Hmgb4Q6P8W9 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb4Q6P8W9 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC21.01■□□□□ 0.95
Hmgb4Q6P8W9 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
Hmgb4Q6P8W9 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC21.01■□□□□ 0.95
Hmgb4Q6P8W9 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb4Q6P8W9 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
Hmgb4Q6P8W9 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Hmgb4Q6P8W9 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Hmgb4Q6P8W9 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Hmgb4Q6P8W9 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21■□□□□ 0.95
Hmgb4Q6P8W9 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Hmgb4Q6P8W9 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21■□□□□ 0.95
Hmgb4Q6P8W9 Gm21168-201ENSMUST00000199646 1096 ntBASIC21■□□□□ 0.95
Hmgb4Q6P8W9 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms