Protein–RNA interactions for Protein: Q62231

Six1, Homeobox protein SIX1, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six1Q62231 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Six1Q62231 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.89■□□□□ 0.93
Six1Q62231 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
Six1Q62231 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Six1Q62231 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Six1Q62231 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Six1Q62231 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Six1Q62231 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.88■□□□□ 0.93
Six1Q62231 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Six1Q62231 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Six1Q62231 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.88■□□□□ 0.93
Six1Q62231 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Six1Q62231 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Six1Q62231 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Six1Q62231 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Six1Q62231 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.87■□□□□ 0.93
Six1Q62231 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20.87■□□□□ 0.93
Six1Q62231 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.87■□□□□ 0.93
Six1Q62231 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Six1Q62231 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Six1Q62231 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Six1Q62231 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Six1Q62231 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Six1Q62231 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
Six1Q62231 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Six1Q62231 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Six1Q62231 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Six1Q62231 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Six1Q62231 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.86■□□□□ 0.93
Six1Q62231 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Six1Q62231 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Six1Q62231 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Six1Q62231 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.85■□□□□ 0.93
Six1Q62231 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Six1Q62231 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Six1Q62231 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Six1Q62231 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Six1Q62231 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC20.84■□□□□ 0.93
Six1Q62231 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Six1Q62231 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Six1Q62231 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Six1Q62231 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Six1Q62231 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.83■□□□□ 0.93
Six1Q62231 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Six1Q62231 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Six1Q62231 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Six1Q62231 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
Six1Q62231 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Six1Q62231 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Six1Q62231 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.83■□□□□ 0.92
Six1Q62231 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.83■□□□□ 0.92
Six1Q62231 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Six1Q62231 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Six1Q62231 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Six1Q62231 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Six1Q62231 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Six1Q62231 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Six1Q62231 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.82■□□□□ 0.92
Six1Q62231 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Six1Q62231 Gm10232-201ENSMUST00000089221 720 ntBASIC20.82■□□□□ 0.92
Six1Q62231 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Six1Q62231 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Six1Q62231 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Six1Q62231 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Six1Q62231 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.81■□□□□ 0.92
Six1Q62231 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Six1Q62231 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.8■□□□□ 0.92
Six1Q62231 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC20.8■□□□□ 0.92
Six1Q62231 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.8■□□□□ 0.92
Six1Q62231 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Six1Q62231 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Six1Q62231 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Six1Q62231 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Six1Q62231 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Six1Q62231 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Six1Q62231 Gm7143-201ENSMUST00000222811 859 ntBASIC20.79■□□□□ 0.92
Six1Q62231 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Six1Q62231 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Six1Q62231 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Six1Q62231 AC166356.1-201ENSMUST00000228236 1426 ntBASIC20.78■□□□□ 0.92
Six1Q62231 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Six1Q62231 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Six1Q62231 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Six1Q62231 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Six1Q62231 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Six1Q62231 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Six1Q62231 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Six1Q62231 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Six1Q62231 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Six1Q62231 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Six1Q62231 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Six1Q62231 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Six1Q62231 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Six1Q62231 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Six1Q62231 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.77■□□□□ 0.92
Six1Q62231 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Six1Q62231 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Six1Q62231 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Six1Q62231 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Six1Q62231 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms