Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Col11a1Q61245 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
Col11a1Q61245 Reep4-203ENSMUST00000226563 1444 ntBASIC23.25■■□□□ 1.31
Col11a1Q61245 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Col11a1Q61245 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Col11a1Q61245 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Col11a1Q61245 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Col11a1Q61245 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Col11a1Q61245 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC23.24■■□□□ 1.31
Col11a1Q61245 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Col11a1Q61245 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC23.24■■□□□ 1.31
Col11a1Q61245 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Col11a1Q61245 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Col11a1Q61245 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Col11a1Q61245 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
Col11a1Q61245 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Col11a1Q61245 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Col11a1Q61245 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Col11a1Q61245 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC23.22■■□□□ 1.31
Col11a1Q61245 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Col11a1Q61245 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Col11a1Q61245 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
Col11a1Q61245 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC23.22■■□□□ 1.31
Col11a1Q61245 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC23.22■■□□□ 1.31
Col11a1Q61245 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
Col11a1Q61245 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col11a1Q61245 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col11a1Q61245 Gm27801-201ENSMUST00000184174 223 ntBASIC23.21■■□□□ 1.31
Col11a1Q61245 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC23.21■■□□□ 1.31
Col11a1Q61245 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
Col11a1Q61245 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col11a1Q61245 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Col11a1Q61245 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col11a1Q61245 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC23.2■■□□□ 1.3
Col11a1Q61245 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
Col11a1Q61245 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Col11a1Q61245 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC23.2■■□□□ 1.3
Col11a1Q61245 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Col11a1Q61245 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC23.2■■□□□ 1.3
Col11a1Q61245 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Col11a1Q61245 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Col11a1Q61245 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
Col11a1Q61245 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Col11a1Q61245 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Col11a1Q61245 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Col11a1Q61245 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Col11a1Q61245 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC23.19■■□□□ 1.3
Col11a1Q61245 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Col11a1Q61245 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col11a1Q61245 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC23.18■■□□□ 1.3
Col11a1Q61245 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col11a1Q61245 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col11a1Q61245 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col11a1Q61245 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Col11a1Q61245 Gm44949-201ENSMUST00000206423 1450 ntBASIC23.18■■□□□ 1.3
Col11a1Q61245 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC23.17■■□□□ 1.3
Col11a1Q61245 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
Col11a1Q61245 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Col11a1Q61245 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC23.17■■□□□ 1.3
Col11a1Q61245 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Col11a1Q61245 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col11a1Q61245 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Col11a1Q61245 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col11a1Q61245 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col11a1Q61245 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC23.16■■□□□ 1.3
Col11a1Q61245 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Col11a1Q61245 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Col11a1Q61245 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Col11a1Q61245 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Col11a1Q61245 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Col11a1Q61245 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC23.15■■□□□ 1.3
Col11a1Q61245 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Col11a1Q61245 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Col11a1Q61245 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Col11a1Q61245 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Col11a1Q61245 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Col11a1Q61245 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Col11a1Q61245 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Col11a1Q61245 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC23.15■■□□□ 1.3
Col11a1Q61245 AC137127.1-201ENSMUST00000213466 1078 ntBASIC23.15■■□□□ 1.3
Col11a1Q61245 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Col11a1Q61245 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Col11a1Q61245 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC23.14■■□□□ 1.29
Col11a1Q61245 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Col11a1Q61245 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Col11a1Q61245 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Col11a1Q61245 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Col11a1Q61245 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Col11a1Q61245 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
Col11a1Q61245 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Col11a1Q61245 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Col11a1Q61245 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC23.13■■□□□ 1.29
Col11a1Q61245 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Col11a1Q61245 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Col11a1Q61245 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Col11a1Q61245 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Col11a1Q61245 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Col11a1Q61245 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Col11a1Q61245 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Col11a1Q61245 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms