Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ClpbQ60649 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ClpbQ60649 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ClpbQ60649 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
ClpbQ60649 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ClpbQ60649 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ClpbQ60649 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
ClpbQ60649 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ClpbQ60649 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ClpbQ60649 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ClpbQ60649 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ClpbQ60649 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
ClpbQ60649 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
ClpbQ60649 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.35■□□□□ 0.69
ClpbQ60649 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ClpbQ60649 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ClpbQ60649 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ClpbQ60649 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ClpbQ60649 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ClpbQ60649 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
ClpbQ60649 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.34■□□□□ 0.69
ClpbQ60649 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ClpbQ60649 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ClpbQ60649 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
ClpbQ60649 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ClpbQ60649 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ClpbQ60649 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC19.33■□□□□ 0.68
ClpbQ60649 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC19.33■□□□□ 0.68
ClpbQ60649 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC19.33■□□□□ 0.68
ClpbQ60649 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ClpbQ60649 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
ClpbQ60649 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
ClpbQ60649 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ClpbQ60649 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
ClpbQ60649 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ClpbQ60649 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
ClpbQ60649 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
ClpbQ60649 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ClpbQ60649 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ClpbQ60649 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ClpbQ60649 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC19.32■□□□□ 0.68
ClpbQ60649 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ClpbQ60649 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ClpbQ60649 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ClpbQ60649 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.32■□□□□ 0.68
ClpbQ60649 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.32■□□□□ 0.68
ClpbQ60649 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ClpbQ60649 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ClpbQ60649 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ClpbQ60649 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ClpbQ60649 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
ClpbQ60649 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC19.31■□□□□ 0.68
ClpbQ60649 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ClpbQ60649 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ClpbQ60649 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC19.31■□□□□ 0.68
ClpbQ60649 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
ClpbQ60649 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ClpbQ60649 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ClpbQ60649 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
ClpbQ60649 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ClpbQ60649 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ClpbQ60649 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ClpbQ60649 Gm43034-201ENSMUST00000198678 1364 ntBASIC19.31■□□□□ 0.68
ClpbQ60649 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
ClpbQ60649 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.3■□□□□ 0.68
ClpbQ60649 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ClpbQ60649 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.3■□□□□ 0.68
ClpbQ60649 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ClpbQ60649 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.3■□□□□ 0.68
ClpbQ60649 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ClpbQ60649 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ClpbQ60649 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ClpbQ60649 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ClpbQ60649 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ClpbQ60649 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ClpbQ60649 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ClpbQ60649 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ClpbQ60649 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ClpbQ60649 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ClpbQ60649 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC19.29■□□□□ 0.68
ClpbQ60649 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
ClpbQ60649 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
ClpbQ60649 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ClpbQ60649 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ClpbQ60649 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ClpbQ60649 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC19.28■□□□□ 0.68
ClpbQ60649 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
ClpbQ60649 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
ClpbQ60649 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ClpbQ60649 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ClpbQ60649 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.28■□□□□ 0.68
ClpbQ60649 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ClpbQ60649 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
ClpbQ60649 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
ClpbQ60649 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC19.27■□□□□ 0.68
ClpbQ60649 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC19.27■□□□□ 0.68
ClpbQ60649 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.27■□□□□ 0.68
ClpbQ60649 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ClpbQ60649 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ClpbQ60649 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms