Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC25.23■■□□□ 1.63
Ubr3Q5U430 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC25.23■■□□□ 1.63
Ubr3Q5U430 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ubr3Q5U430 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ubr3Q5U430 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC25.22■■□□□ 1.63
Ubr3Q5U430 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ubr3Q5U430 Gm10653-202ENSMUST00000139570 835 ntBASIC25.21■■□□□ 1.63
Ubr3Q5U430 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ubr3Q5U430 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Ubr3Q5U430 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC25.21■■□□□ 1.63
Ubr3Q5U430 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC25.21■■□□□ 1.63
Ubr3Q5U430 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.63
Ubr3Q5U430 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.63
Ubr3Q5U430 Reep4-203ENSMUST00000226563 1444 ntBASIC25.2■■□□□ 1.62
Ubr3Q5U430 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Ubr3Q5U430 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Ubr3Q5U430 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC25.2■■□□□ 1.62
Ubr3Q5U430 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
Ubr3Q5U430 Gm9988-201ENSMUST00000069786 435 ntBASIC25.19■■□□□ 1.62
Ubr3Q5U430 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC25.19■■□□□ 1.62
Ubr3Q5U430 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Ubr3Q5U430 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Ubr3Q5U430 Gm12441-201ENSMUST00000121806 588 ntBASIC25.19■■□□□ 1.62
Ubr3Q5U430 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Ubr3Q5U430 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC25.19■■□□□ 1.62
Ubr3Q5U430 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Ubr3Q5U430 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
Ubr3Q5U430 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Ubr3Q5U430 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC25.17■■□□□ 1.62
Ubr3Q5U430 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
Ubr3Q5U430 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC25.17■■□□□ 1.62
Ubr3Q5U430 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ubr3Q5U430 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ubr3Q5U430 AC153962.1-201ENSMUST00000218530 1948 ntBASIC25.17■■□□□ 1.62
Ubr3Q5U430 AC164883.3-201ENSMUST00000227396 1774 ntBASIC25.17■■□□□ 1.62
Ubr3Q5U430 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ubr3Q5U430 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ubr3Q5U430 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
Ubr3Q5U430 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ubr3Q5U430 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Ubr3Q5U430 Gm27801-201ENSMUST00000184174 223 ntBASIC25.16■■□□□ 1.62
Ubr3Q5U430 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Ubr3Q5U430 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Ubr3Q5U430 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Ubr3Q5U430 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ubr3Q5U430 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ubr3Q5U430 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ubr3Q5U430 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ubr3Q5U430 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ubr3Q5U430 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Ubr3Q5U430 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ubr3Q5U430 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ubr3Q5U430 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ubr3Q5U430 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Ubr3Q5U430 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ubr3Q5U430 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Ubr3Q5U430 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Ubr3Q5U430 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ubr3Q5U430 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Ubr3Q5U430 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Ubr3Q5U430 Gm42418-201ENSMUST00000182010 1831 ntBASIC25.13■■□□□ 1.61
Ubr3Q5U430 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ubr3Q5U430 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ubr3Q5U430 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ubr3Q5U430 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ubr3Q5U430 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ubr3Q5U430 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC25.13■■□□□ 1.61
Ubr3Q5U430 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Ubr3Q5U430 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Ubr3Q5U430 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Ubr3Q5U430 AC137127.1-201ENSMUST00000213466 1078 ntBASIC25.12■■□□□ 1.61
Ubr3Q5U430 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Ubr3Q5U430 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Ubr3Q5U430 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
Ubr3Q5U430 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC25.11■■□□□ 1.61
Ubr3Q5U430 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Ubr3Q5U430 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Ubr3Q5U430 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
Ubr3Q5U430 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Ubr3Q5U430 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC25.11■■□□□ 1.61
Ubr3Q5U430 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC25.1■■□□□ 1.61
Ubr3Q5U430 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Ubr3Q5U430 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Ubr3Q5U430 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Ubr3Q5U430 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC25.1■■□□□ 1.61
Ubr3Q5U430 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC25.1■■□□□ 1.61
Ubr3Q5U430 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ubr3Q5U430 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Ubr3Q5U430 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Ubr3Q5U430 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
Ubr3Q5U430 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ubr3Q5U430 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ubr3Q5U430 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ubr3Q5U430 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ubr3Q5U430 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Ubr3Q5U430 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Ubr3Q5U430 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
Ubr3Q5U430 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
Ubr3Q5U430 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ubr3Q5U430 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms