Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6d-4Q5R1I0 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6d-4Q5R1I0 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav6d-4Q5R1I0 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav6d-4Q5R1I0 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav6d-4Q5R1I0 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC17.02■□□□□ 0.32
Trav6d-4Q5R1I0 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC17.02■□□□□ 0.32
Trav6d-4Q5R1I0 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trav6d-4Q5R1I0 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trav6d-4Q5R1I0 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6d-4Q5R1I0 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
Trav6d-4Q5R1I0 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6d-4Q5R1I0 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6d-4Q5R1I0 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6d-4Q5R1I0 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Trav6d-4Q5R1I0 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6d-4Q5R1I0 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6d-4Q5R1I0 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6d-4Q5R1I0 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6d-4Q5R1I0 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC17■□□□□ 0.31
Trav6d-4Q5R1I0 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6d-4Q5R1I0 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6d-4Q5R1I0 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6d-4Q5R1I0 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6d-4Q5R1I0 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6d-4Q5R1I0 Gm5576-201ENSMUST00000075809 1236 ntBASIC16.99■□□□□ 0.31
Trav6d-4Q5R1I0 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Trav6d-4Q5R1I0 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
Trav6d-4Q5R1I0 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6d-4Q5R1I0 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6d-4Q5R1I0 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Mir7075-201ENSMUST00000184187 82 ntBASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Gm13042-201ENSMUST00000119244 1955 ntBASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6d-4Q5R1I0 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trav6d-4Q5R1I0 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Trav6d-4Q5R1I0 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trav6d-4Q5R1I0 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6d-4Q5R1I0 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms