Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col27a1Q5QNQ9 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.09■□□□□ 0.81
Col27a1Q5QNQ9 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Col27a1Q5QNQ9 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col27a1Q5QNQ9 Gm12527-201ENSMUST00000117967 564 ntBASIC20.09■□□□□ 0.81
Col27a1Q5QNQ9 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col27a1Q5QNQ9 Gm7514-201ENSMUST00000209475 934 ntBASIC20.09■□□□□ 0.81
Col27a1Q5QNQ9 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.09■□□□□ 0.81
Col27a1Q5QNQ9 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col27a1Q5QNQ9 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.08■□□□□ 0.81
Col27a1Q5QNQ9 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col27a1Q5QNQ9 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col27a1Q5QNQ9 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Col27a1Q5QNQ9 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col27a1Q5QNQ9 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.08■□□□□ 0.8
Col27a1Q5QNQ9 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Col27a1Q5QNQ9 Gm22240-201ENSMUST00000175225 82 ntBASIC20.08■□□□□ 0.8
Col27a1Q5QNQ9 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.08■□□□□ 0.8
Col27a1Q5QNQ9 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col27a1Q5QNQ9 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col27a1Q5QNQ9 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
Col27a1Q5QNQ9 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col27a1Q5QNQ9 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col27a1Q5QNQ9 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col27a1Q5QNQ9 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Col27a1Q5QNQ9 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col27a1Q5QNQ9 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Col27a1Q5QNQ9 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col27a1Q5QNQ9 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col27a1Q5QNQ9 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col27a1Q5QNQ9 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Col27a1Q5QNQ9 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.05■□□□□ 0.8
Col27a1Q5QNQ9 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col27a1Q5QNQ9 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col27a1Q5QNQ9 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col27a1Q5QNQ9 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC20.04■□□□□ 0.8
Col27a1Q5QNQ9 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Col27a1Q5QNQ9 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col27a1Q5QNQ9 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC20.04■□□□□ 0.8
Col27a1Q5QNQ9 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC20.04■□□□□ 0.8
Col27a1Q5QNQ9 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col27a1Q5QNQ9 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col27a1Q5QNQ9 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col27a1Q5QNQ9 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col27a1Q5QNQ9 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col27a1Q5QNQ9 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col27a1Q5QNQ9 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col27a1Q5QNQ9 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col27a1Q5QNQ9 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col27a1Q5QNQ9 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col27a1Q5QNQ9 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col27a1Q5QNQ9 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col27a1Q5QNQ9 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col27a1Q5QNQ9 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC20.02■□□□□ 0.8
Col27a1Q5QNQ9 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.02■□□□□ 0.79
Col27a1Q5QNQ9 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col27a1Q5QNQ9 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.02■□□□□ 0.79
Col27a1Q5QNQ9 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col27a1Q5QNQ9 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col27a1Q5QNQ9 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC20.01■□□□□ 0.79
Col27a1Q5QNQ9 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col27a1Q5QNQ9 Gm13168-201ENSMUST00000121771 632 ntBASIC20■□□□□ 0.79
Col27a1Q5QNQ9 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col27a1Q5QNQ9 Gm8520-201ENSMUST00000186517 868 ntBASIC20■□□□□ 0.79
Col27a1Q5QNQ9 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20■□□□□ 0.79
Col27a1Q5QNQ9 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col27a1Q5QNQ9 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col27a1Q5QNQ9 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Col27a1Q5QNQ9 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col27a1Q5QNQ9 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Col27a1Q5QNQ9 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col27a1Q5QNQ9 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC19.99■□□□□ 0.79
Col27a1Q5QNQ9 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col27a1Q5QNQ9 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col27a1Q5QNQ9 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col27a1Q5QNQ9 AC115037.1-201ENSMUST00000223391 2173 ntBASIC19.99■□□□□ 0.79
Col27a1Q5QNQ9 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col27a1Q5QNQ9 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.99■□□□□ 0.79
Col27a1Q5QNQ9 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Col27a1Q5QNQ9 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col27a1Q5QNQ9 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col27a1Q5QNQ9 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col27a1Q5QNQ9 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col27a1Q5QNQ9 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col27a1Q5QNQ9 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col27a1Q5QNQ9 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC19.97■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms