Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Msx1P13297 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
Msx1P13297 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC19.13■□□□□ 0.65
Msx1P13297 Gm43017-201ENSMUST00000198296 752 ntBASIC19.13■□□□□ 0.65
Msx1P13297 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Msx1P13297 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Msx1P13297 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Msx1P13297 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Msx1P13297 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Msx1P13297 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
Msx1P13297 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Msx1P13297 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Msx1P13297 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Msx1P13297 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Msx1P13297 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Msx1P13297 Mir7075-201ENSMUST00000184187 82 ntBASIC19.12■□□□□ 0.65
Msx1P13297 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
Msx1P13297 Gm9870-201ENSMUST00000063874 645 ntBASIC19.12■□□□□ 0.65
Msx1P13297 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Msx1P13297 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Msx1P13297 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Msx1P13297 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Msx1P13297 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Msx1P13297 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Msx1P13297 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.11■□□□□ 0.65
Msx1P13297 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Msx1P13297 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Msx1P13297 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Msx1P13297 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Msx1P13297 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Msx1P13297 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Msx1P13297 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC19.1■□□□□ 0.65
Msx1P13297 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Msx1P13297 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Msx1P13297 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Msx1P13297 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Msx1P13297 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Msx1P13297 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Msx1P13297 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Msx1P13297 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Msx1P13297 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Msx1P13297 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Msx1P13297 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Msx1P13297 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Msx1P13297 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC19.09■□□□□ 0.65
Msx1P13297 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Msx1P13297 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Msx1P13297 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Msx1P13297 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Msx1P13297 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Msx1P13297 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Msx1P13297 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Msx1P13297 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Msx1P13297 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Msx1P13297 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Msx1P13297 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Msx1P13297 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Msx1P13297 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Msx1P13297 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Msx1P13297 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Msx1P13297 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Msx1P13297 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Msx1P13297 Gm5874-201ENSMUST00000096101 508 ntBASIC19.07■□□□□ 0.64
Msx1P13297 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Msx1P13297 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Msx1P13297 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Msx1P13297 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
Msx1P13297 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Msx1P13297 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Msx1P13297 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Msx1P13297 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Msx1P13297 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Msx1P13297 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Msx1P13297 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Msx1P13297 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Msx1P13297 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC19.06■□□□□ 0.64
Msx1P13297 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC19.06■□□□□ 0.64
Msx1P13297 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Msx1P13297 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Msx1P13297 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Msx1P13297 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Msx1P13297 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Msx1P13297 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Msx1P13297 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.06■□□□□ 0.64
Msx1P13297 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Msx1P13297 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Msx1P13297 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.05■□□□□ 0.64
Msx1P13297 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Msx1P13297 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Msx1P13297 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Msx1P13297 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Msx1P13297 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Msx1P13297 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Msx1P13297 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Msx1P13297 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Msx1P13297 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.04■□□□□ 0.64
Msx1P13297 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Msx1P13297 Gm38160-201ENSMUST00000193090 2499 ntBASIC19.04■□□□□ 0.64
Msx1P13297 Gm8493-201ENSMUST00000196881 489 ntBASIC19.04■□□□□ 0.64
Msx1P13297 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC19.04■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms