Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Pcdha4O88689 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Pcdha4O88689 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Pcdha4O88689 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Pcdha4O88689 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC22.65■■□□□ 1.22
Pcdha4O88689 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
Pcdha4O88689 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Pcdha4O88689 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Pcdha4O88689 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Pcdha4O88689 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
Pcdha4O88689 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdha4O88689 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdha4O88689 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
Pcdha4O88689 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdha4O88689 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdha4O88689 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdha4O88689 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdha4O88689 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Pcdha4O88689 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
Pcdha4O88689 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Pcdha4O88689 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Pcdha4O88689 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Pcdha4O88689 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
Pcdha4O88689 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Pcdha4O88689 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Pcdha4O88689 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Pcdha4O88689 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Pcdha4O88689 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
Pcdha4O88689 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Pcdha4O88689 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Pcdha4O88689 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC22.62■■□□□ 1.21
Pcdha4O88689 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Pcdha4O88689 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC22.62■■□□□ 1.21
Pcdha4O88689 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC22.61■■□□□ 1.21
Pcdha4O88689 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC22.61■■□□□ 1.21
Pcdha4O88689 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Pcdha4O88689 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Pcdha4O88689 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
Pcdha4O88689 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Pcdha4O88689 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Pcdha4O88689 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
Pcdha4O88689 Gm12821-201ENSMUST00000120022 600 ntBASIC22.6■■□□□ 1.21
Pcdha4O88689 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC22.6■■□□□ 1.21
Pcdha4O88689 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Pcdha4O88689 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Pcdha4O88689 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC22.6■■□□□ 1.21
Pcdha4O88689 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC22.6■■□□□ 1.21
Pcdha4O88689 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
Pcdha4O88689 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Pcdha4O88689 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC22.6■■□□□ 1.21
Pcdha4O88689 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Pcdha4O88689 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Pcdha4O88689 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Pcdha4O88689 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
Pcdha4O88689 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Pcdha4O88689 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha4O88689 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha4O88689 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha4O88689 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
Pcdha4O88689 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha4O88689 Mir6236-201ENSMUST00000184437 123 ntBASIC22.59■■□□□ 1.21
Pcdha4O88689 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha4O88689 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha4O88689 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC22.59■■□□□ 1.21
Pcdha4O88689 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha4O88689 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
Pcdha4O88689 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha4O88689 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha4O88689 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha4O88689 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha4O88689 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha4O88689 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Pcdha4O88689 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
Pcdha4O88689 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Pcdha4O88689 Gm43006-201ENSMUST00000197702 1602 ntBASIC22.58■■□□□ 1.21
Pcdha4O88689 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
Pcdha4O88689 Appbp2os-202ENSMUST00000206972 447 ntBASIC22.58■■□□□ 1.21
Pcdha4O88689 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC22.58■■□□□ 1.21
Pcdha4O88689 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdha4O88689 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdha4O88689 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdha4O88689 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
Pcdha4O88689 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdha4O88689 Snhg20-203ENSMUST00000182811 2153 ntBASIC22.57■■□□□ 1.2
Pcdha4O88689 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdha4O88689 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Pcdha4O88689 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdha4O88689 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdha4O88689 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC22.56■■□□□ 1.2
Pcdha4O88689 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Pcdha4O88689 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Pcdha4O88689 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC22.56■■□□□ 1.2
Pcdha4O88689 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
Pcdha4O88689 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Pcdha4O88689 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
Pcdha4O88689 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
Pcdha4O88689 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Pcdha4O88689 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC22.55■■□□□ 1.2
Pcdha4O88689 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Pcdha4O88689 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms