Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav13d-3J3QMG8 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav13d-3J3QMG8 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav13d-3J3QMG8 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav13d-3J3QMG8 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC17.81■□□□□ 0.44
Trav13d-3J3QMG8 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC17.81■□□□□ 0.44
Trav13d-3J3QMG8 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trav13d-3J3QMG8 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC17.81■□□□□ 0.44
Trav13d-3J3QMG8 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Trav13d-3J3QMG8 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC17.81■□□□□ 0.44
Trav13d-3J3QMG8 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav13d-3J3QMG8 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trav13d-3J3QMG8 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav13d-3J3QMG8 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav13d-3J3QMG8 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trav13d-3J3QMG8 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trav13d-3J3QMG8 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav13d-3J3QMG8 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC17.8■□□□□ 0.44
Trav13d-3J3QMG8 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Trav13d-3J3QMG8 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav13d-3J3QMG8 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav13d-3J3QMG8 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav13d-3J3QMG8 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav13d-3J3QMG8 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav13d-3J3QMG8 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav13d-3J3QMG8 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav13d-3J3QMG8 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav13d-3J3QMG8 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav13d-3J3QMG8 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav13d-3J3QMG8 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trav13d-3J3QMG8 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav13d-3J3QMG8 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav13d-3J3QMG8 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trav13d-3J3QMG8 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav13d-3J3QMG8 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav13d-3J3QMG8 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav13d-3J3QMG8 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Trav13d-3J3QMG8 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trav13d-3J3QMG8 Gm10657-201ENSMUST00000193528 1031 ntBASIC17.78■□□□□ 0.44
Trav13d-3J3QMG8 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trav13d-3J3QMG8 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trav13d-3J3QMG8 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav13d-3J3QMG8 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.78■□□□□ 0.44
Trav13d-3J3QMG8 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Gm37035-201ENSMUST00000194809 2148 ntBASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav13d-3J3QMG8 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Trav13d-3J3QMG8 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Trav13d-3J3QMG8 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trav13d-3J3QMG8 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav13d-3J3QMG8 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav13d-3J3QMG8 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav13d-3J3QMG8 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav13d-3J3QMG8 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Trav13d-3J3QMG8 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC17.75■□□□□ 0.43
Trav13d-3J3QMG8 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trav13d-3J3QMG8 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav13d-3J3QMG8 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav13d-3J3QMG8 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav13d-3J3QMG8 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav13d-3J3QMG8 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav13d-3J3QMG8 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav13d-3J3QMG8 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC17.74■□□□□ 0.43
Trav13d-3J3QMG8 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav13d-3J3QMG8 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav13d-3J3QMG8 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Trav13d-3J3QMG8 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Trav13d-3J3QMG8 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav13d-3J3QMG8 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Trav13d-3J3QMG8 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav13d-3J3QMG8 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trav13d-3J3QMG8 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
Trav13d-3J3QMG8 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav13d-3J3QMG8 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC17.73■□□□□ 0.43
Trav13d-3J3QMG8 Gm43530-201ENSMUST00000195920 274 ntBASIC17.73■□□□□ 0.43
Trav13d-3J3QMG8 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms