Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Cdx1P18111 Ano2-204ENSMUST00000160496 3925 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Cdx1P18111 Cfap74-209ENSMUST00000151083 5487 ntAPPRIS ALT2 TSL 5 BASIC9.08□□□□□ -0.96
Cdx1P18111 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Brat1-203ENSMUST00000110806 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC9.07□□□□□ -0.96
Cdx1P18111 Grpr-201ENSMUST00000033730 2523 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 AC121574.1-201ENSMUST00000228770 3132 ntBASIC9.07□□□□□ -0.96
Cdx1P18111 Epb41-202ENSMUST00000054917 4948 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Gpi1-201ENSMUST00000038027 2884 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Gm44152-201ENSMUST00000205007 1691 ntBASIC9.07□□□□□ -0.96
Cdx1P18111 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC9.07□□□□□ -0.96
Cdx1P18111 Notch2-201ENSMUST00000079812 10500 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Manea-201ENSMUST00000041374 4867 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Aen-203ENSMUST00000107425 4956 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Gpm6b-204ENSMUST00000112226 3174 ntAPPRIS ALT1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Nrap-202ENSMUST00000073536 5501 ntAPPRIS P4 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Hsd3b5-201ENSMUST00000044094 1549 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Gm11426-201ENSMUST00000125600 2220 ntTSL 2 BASIC9.07□□□□□ -0.96
Cdx1P18111 Golm1-201ENSMUST00000022039 3954 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Zfp658-201ENSMUST00000005597 2664 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Oprm1-213ENSMUST00000105604 1616 ntAPPRIS ALT1 TSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC9.07□□□□□ -0.96
Cdx1P18111 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC9.07□□□□□ -0.96
Cdx1P18111 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Gm25700-201ENSMUST00000177693 110 ntBASIC9.07□□□□□ -0.96
Cdx1P18111 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Rprl1-202ENSMUST00000198476 238 ntBASIC9.07□□□□□ -0.96
Cdx1P18111 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 N6amt1-204ENSMUST00000120284 3473 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Gm43597-202ENSMUST00000201992 4620 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC9.07□□□□□ -0.96
Cdx1P18111 Psd4-201ENSMUST00000056641 4748 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Prkcd-208ENSMUST00000112211 2851 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Nrros-204ENSMUST00000126869 2540 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Acacb-202ENSMUST00000102582 8788 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
Cdx1P18111 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Cd247-206ENSMUST00000161971 2713 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Myh9-201ENSMUST00000016771 7433 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Osmr-201ENSMUST00000022746 5491 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Mapkbp1-201ENSMUST00000066058 6942 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Tacr1-201ENSMUST00000032122 5021 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Armc9-201ENSMUST00000027434 5127 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Cdx1P18111 Tro-203ENSMUST00000112709 6610 ntAPPRIS P3 TSL 5 BASIC9.06□□□□□ -0.96
Cdx1P18111 Spaar-201ENSMUST00000131248 4086 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Ubr1-201ENSMUST00000028728 7768 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Itgad-204ENSMUST00000177111 3845 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
Cdx1P18111 Fam222b-203ENSMUST00000155571 3358 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Gm28138-201ENSMUST00000186250 2167 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Gm29270-201ENSMUST00000188071 2167 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Gm29392-201ENSMUST00000189429 2167 ntTSL 5 BASIC9.06□□□□□ -0.96
Cdx1P18111 Gm29252-201ENSMUST00000189869 2167 ntTSL 5 BASIC9.06□□□□□ -0.96
Cdx1P18111 Gm29305-201ENSMUST00000191054 2167 ntTSL 5 BASIC9.06□□□□□ -0.96
Cdx1P18111 Aqp7-202ENSMUST00000054945 2154 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Anks1b-233ENSMUST00000183156 4248 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
Cdx1P18111 Gm45165-201ENSMUST00000207763 1631 ntBASIC9.06□□□□□ -0.96
Cdx1P18111 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC9.06□□□□□ -0.96
Cdx1P18111 Ppp2r5c-205ENSMUST00000221715 2367 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Atp1a3-202ENSMUST00000102858 3895 ntTSL 2 BASIC9.06□□□□□ -0.96
Cdx1P18111 Duoxa1-203ENSMUST00000110538 2467 ntTSL 5 BASIC9.06□□□□□ -0.96
Cdx1P18111 Gm26780-201ENSMUST00000180748 2495 ntTSL 5 BASIC9.06□□□□□ -0.96
Cdx1P18111 Ralgps1-205ENSMUST00000131298 6035 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Itga3-202ENSMUST00000107739 4636 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Styx-205ENSMUST00000226873 12974 ntAPPRIS P1 BASIC9.06□□□□□ -0.96
Cdx1P18111 Ces1f-201ENSMUST00000034178 1926 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Zfp944-201ENSMUST00000115535 2784 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
Cdx1P18111 Slc19a1-208ENSMUST00000136925 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC9.06□□□□□ -0.96
Cdx1P18111 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
Cdx1P18111 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC9.06□□□□□ -0.96
Cdx1P18111 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC9.06□□□□□ -0.96
Cdx1P18111 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Cdx1P18111 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC9.06□□□□□ -0.96
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms