Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Avpr2-202ENSMUST00000101470 2787 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC13□□□□□ -0.33
Traf1P39428 Gm30648-202ENSMUST00000200648 1957 ntTSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Eid3-201ENSMUST00000211623 1305 ntAPPRIS P1 BASIC13□□□□□ -0.33
Traf1P39428 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Traf1P39428 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Traf1P39428 Gm15617-201ENSMUST00000118973 771 ntBASIC13□□□□□ -0.33
Traf1P39428 Gm11675-201ENSMUST00000121873 832 ntBASIC13□□□□□ -0.33
Traf1P39428 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC13□□□□□ -0.33
Traf1P39428 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC13□□□□□ -0.33
Traf1P39428 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC13□□□□□ -0.33
Traf1P39428 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC13□□□□□ -0.33
Traf1P39428 Gm19246-201ENSMUST00000173599 255 ntBASIC13□□□□□ -0.33
Traf1P39428 Gm17798-201ENSMUST00000182282 1035 ntBASIC13□□□□□ -0.33
Traf1P39428 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC13□□□□□ -0.33
Traf1P39428 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC13□□□□□ -0.33
Traf1P39428 Gm39288-201ENSMUST00000210554 446 ntBASIC13□□□□□ -0.33
Traf1P39428 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC13□□□□□ -0.33
Traf1P39428 Gm10020-201ENSMUST00000081993 612 ntBASIC13□□□□□ -0.33
Traf1P39428 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Traf1P39428 Hspa5-201ENSMUST00000028222 3672 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Traf1P39428 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Traf1P39428 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC13□□□□□ -0.33
Traf1P39428 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC13□□□□□ -0.33
Traf1P39428 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC13□□□□□ -0.33
Traf1P39428 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC13□□□□□ -0.33
Traf1P39428 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC12.99□□□□□ -0.33
Traf1P39428 Ly75-201ENSMUST00000028362 5172 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC12.99□□□□□ -0.33
Traf1P39428 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Klhl18-205ENSMUST00000198400 4638 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC12.99□□□□□ -0.33
Traf1P39428 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Gm3765-201ENSMUST00000130985 1447 ntBASIC12.99□□□□□ -0.33
Traf1P39428 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
Traf1P39428 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC12.99□□□□□ -0.33
Traf1P39428 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Bmp5-201ENSMUST00000012281 3822 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
Traf1P39428 Gm44323-201ENSMUST00000198689 129 ntBASIC12.99□□□□□ -0.33
Traf1P39428 Gm43671-201ENSMUST00000200422 433 ntBASIC12.99□□□□□ -0.33
Traf1P39428 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Gm45592-201ENSMUST00000209605 1043 ntBASIC12.99□□□□□ -0.33
Traf1P39428 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
Traf1P39428 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Traf1P39428 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC12.99□□□□□ -0.33
Traf1P39428 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Traf1P39428 Bach1-201ENSMUST00000026703 5867 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Traf1P39428 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Traf1P39428 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Traf1P39428 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Traf1P39428 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC12.98□□□□□ -0.33
Traf1P39428 Gm26684-202ENSMUST00000228229 8257 ntBASIC12.98□□□□□ -0.33
Traf1P39428 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 93.8 ms