Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Mir669p-1-201ENSMUST00000103884 87 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm14975-201ENSMUST00000118741 664 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm12029-201ENSMUST00000120073 832 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm13674-201ENSMUST00000121276 823 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Zfp968-203ENSMUST00000131676 1272 ntAPPRIS P1 TSL 2 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC9.04□□□□□ -0.96
Hoxd3P09027 2810403D21Rik-204ENSMUST00000144421 747 ntTSL 3 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm12407-201ENSMUST00000180219 324 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm5066-201ENSMUST00000188479 822 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 4930565D16Rik-201ENSMUST00000192777 1112 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Trdv3-201ENSMUST00000198551 309 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm5051-201ENSMUST00000204085 485 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm44126-201ENSMUST00000204831 514 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.96
Hoxd3P09027 AC166992.1-201ENSMUST00000216356 565 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC9.04□□□□□ -0.96
Hoxd3P09027 AC120394.1-201ENSMUST00000217153 351 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm4797-201ENSMUST00000219075 1283 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 AC134537.3-201ENSMUST00000220154 503 ntTSL 3 BASIC9.04□□□□□ -0.96
Hoxd3P09027 AC135469.1-201ENSMUST00000225984 772 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 AC112945.1-201ENSMUST00000226413 514 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 AC125464.1-201ENSMUST00000228013 512 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Fsip1-201ENSMUST00000028820 1025 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Olfr434-201ENSMUST00000076752 1056 ntAPPRIS P1 BASIC9.04□□□□□ -0.96
Hoxd3P09027 V1ra8-201ENSMUST00000078371 890 ntAPPRIS P1 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Rnase1-201ENSMUST00000080126 992 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 AC127597.1-201ENSMUST00000225697 5711 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Gtf3c1-201ENSMUST00000055506 6961 ntAPPRIS P2 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Ucp1-201ENSMUST00000034146 1636 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm44562-201ENSMUST00000207194 1347 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm18983-201ENSMUST00000222884 2729 ntBASIC9.03□□□□□ -0.96
Hoxd3P09027 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC9.03□□□□□ -0.96
Hoxd3P09027 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm18198-201ENSMUST00000204986 1551 ntBASIC9.03□□□□□ -0.96
Hoxd3P09027 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 AC138329.2-201ENSMUST00000225579 1842 ntBASIC9.03□□□□□ -0.96
Hoxd3P09027 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm28445-201ENSMUST00000187686 1498 ntTSL 5 BASIC9.03□□□□□ -0.96
Hoxd3P09027 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC9.03□□□□□ -0.96
Hoxd3P09027 Olfr1472-202ENSMUST00000096201 1377 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
Hoxd3P09027 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC9.03□□□□□ -0.96
Hoxd3P09027 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 n-R5s64-201ENSMUST00000102019 119 ntBASIC9.03□□□□□ -0.96
Hoxd3P09027 4933400A11Rik-203ENSMUST00000112102 1101 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm8737-201ENSMUST00000122208 642 ntBASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC9.03□□□□□ -0.96
Hoxd3P09027 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm3150-201ENSMUST00000166418 204 ntBASIC9.03□□□□□ -0.96
Hoxd3P09027 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm20689-201ENSMUST00000176033 279 ntBASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm26706-201ENSMUST00000180718 746 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm43803-202ENSMUST00000197765 580 ntTSL 3 BASIC9.03□□□□□ -0.96
Hoxd3P09027 2510017J16Rik-201ENSMUST00000198718 1263 ntBASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm44506-201ENSMUST00000206278 965 ntBASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hoxd3P09027 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC9.03□□□□□ -0.96
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms