Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Plekhg4-206ENSMUST00000214056 3654 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm6189-201ENSMUST00000164487 2082 ntBASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm44913-201ENSMUST00000208060 2990 ntBASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Lrba-202ENSMUST00000192145 8843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Atp6v1a-201ENSMUST00000063661 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm19327-201ENSMUST00000220651 3271 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Ccdc162-212ENSMUST00000219054 3182 ntTSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Syn2-202ENSMUST00000169345 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Gm10686-201ENSMUST00000215389 3247 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Trak1-201ENSMUST00000045903 4827 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Col6a6-203ENSMUST00000166431 7098 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Gm22920-201ENSMUST00000102175 109 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Gm14193-201ENSMUST00000105067 153 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Gm11949-201ENSMUST00000117640 372 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Gm15004-201ENSMUST00000119192 630 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Gm15207-201ENSMUST00000119259 442 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Gm1848-201ENSMUST00000120711 789 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Mir1901-201ENSMUST00000122616 78 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Gm37299-201ENSMUST00000193951 826 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Gm44270-201ENSMUST00000203084 1234 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Gm6430-201ENSMUST00000054664 1248 ntBASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Tcof1-204ENSMUST00000176630 4529 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Rad51ap2-201ENSMUST00000124065 3175 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Nrip3-201ENSMUST00000033331 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Nell2-202ENSMUST00000166170 3366 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Myocd-203ENSMUST00000108695 5114 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Chic1-201ENSMUST00000116547 7375 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 D930020B18Rik-201ENSMUST00000120642 3335 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Smc1aQ9CU62 Tacc2-205ENSMUST00000207282 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Smc1aQ9CU62 Zfp617-201ENSMUST00000119003 2920 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Smc1aQ9CU62 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Grem1-201ENSMUST00000099575 4148 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Gm38089-201ENSMUST00000193585 1514 ntBASIC12.58□□□□□ -0.4
Smc1aQ9CU62 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Gm13182-201ENSMUST00000122241 312 ntBASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Rn7s6-201ENSMUST00000175005 291 ntBASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Plekha6-204ENSMUST00000187285 5040 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Gm42518-201ENSMUST00000196277 938 ntBASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Gm5714-201ENSMUST00000197343 566 ntBASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Gm18893-201ENSMUST00000198416 943 ntBASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Gm2553-201ENSMUST00000215986 605 ntBASIC12.58□□□□□ -0.4
Smc1aQ9CU62 AC154257.1-202ENSMUST00000224729 843 ntBASIC12.58□□□□□ -0.4
Smc1aQ9CU62 AC099645.1-201ENSMUST00000226476 1105 ntBASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Tnfrsf9-201ENSMUST00000030808 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Smc1aQ9CU62 Gm14005-209ENSMUST00000224993 1832 ntBASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms