Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Cyp26b1-205ENSMUST00000205228 4288 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Zdhhc3-208ENSMUST00000147563 6987 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
Usp11Q99K46 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Usp11Q99K46 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC11.83□□□□□ -0.52
Usp11Q99K46 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC11.83□□□□□ -0.52
Usp11Q99K46 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC11.83□□□□□ -0.52
Usp11Q99K46 Gm20426-201ENSMUST00000173657 440 ntBASIC11.83□□□□□ -0.52
Usp11Q99K46 Gm9540-201ENSMUST00000188230 478 ntBASIC11.83□□□□□ -0.52
Usp11Q99K46 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC11.83□□□□□ -0.52
Usp11Q99K46 Gm18753-201ENSMUST00000201000 566 ntBASIC11.83□□□□□ -0.52
Usp11Q99K46 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Gm6108-201ENSMUST00000208365 367 ntBASIC11.83□□□□□ -0.52
Usp11Q99K46 AC112945.1-201ENSMUST00000226413 514 ntBASIC11.83□□□□□ -0.52
Usp11Q99K46 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
Usp11Q99K46 Plxna3-201ENSMUST00000004326 6943 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Unkl-202ENSMUST00000039734 4779 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Usp11Q99K46 Car12-202ENSMUST00000085420 3639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Pard3-213ENSMUST00000160766 4949 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Usp11Q99K46 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC11.83□□□□□ -0.52
Usp11Q99K46 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 AC159195.3-201ENSMUST00000225162 2211 ntBASIC11.83□□□□□ -0.52
Usp11Q99K46 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Add2-204ENSMUST00000203366 3407 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Usp11Q99K46 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Usp11Q99K46 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Usp11Q99K46 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Gpr149-201ENSMUST00000058535 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Prdm16-203ENSMUST00000097759 8544 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Bace2-201ENSMUST00000047275 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Slc7a1-201ENSMUST00000048116 7179 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Kif3c-201ENSMUST00000020999 6791 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Pml-207ENSMUST00000135310 4413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Slc25a12-206ENSMUST00000151937 6351 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Abca3-203ENSMUST00000117337 5202 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Pcdhb2-201ENSMUST00000056522 2813 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Usp11Q99K46 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Gm6548-201ENSMUST00000167498 1165 ntBASIC11.82□□□□□ -0.52
Usp11Q99K46 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Mir3102-201ENSMUST00000175555 104 ntBASIC11.82□□□□□ -0.52
Usp11Q99K46 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Nsd1-205ENSMUST00000224693 852 ntBASIC11.82□□□□□ -0.52
Usp11Q99K46 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Gm10254-201ENSMUST00000052888 867 ntBASIC11.82□□□□□ -0.52
Usp11Q99K46 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Edaradd-201ENSMUST00000179308 6668 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Il17rd-201ENSMUST00000035336 8280 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Kcnab2-207ENSMUST00000160884 3922 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Ncapd3-205ENSMUST00000216677 5149 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC11.82□□□□□ -0.52
Usp11Q99K46 Mapkap1-209ENSMUST00000147337 3111 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Stk38-201ENSMUST00000009138 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp11Q99K46 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 Fn1-203ENSMUST00000186129 7797 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 Myh9-201ENSMUST00000016771 7433 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Usp11Q99K46 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 Cd276-201ENSMUST00000039788 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 Tnfsf13b-203ENSMUST00000207792 4771 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Usp11Q99K46 Cdca2-207ENSMUST00000163100 3841 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Usp11Q99K46 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usp11Q99K46 Gm10807-201ENSMUST00000177134 795 ntBASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 71.6 ms